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SR-VP_26_10_2020_1_100CM_scaffold_924603

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2020_1_100CM_scaffold_924603_1
RIFOXYA2_FULL_WOR_1_51_19_curated, Saganbacteria, Bacteria

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comp(2..3460)
DNA (3459bp) protein (1153aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L3W2_KORCO
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_924603_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4217..5677)
DNA (1461bp) protein (487aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=SYP_METBU
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_3
unknown

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5822..6499
DNA (678bp) protein (226aa)
pyrH; uridylate kinase
Uridylate kinase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MDB4_9EURY
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_924603_4
unknown

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6632..7657
DNA (1026bp) protein (342aa)
aIF-2BI family translation initiation factor (EC:5.3.1.23)
Putative methylthioribose-1-phosphate isomerase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E603_METEZ
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_924603_5
unknown

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comp(7689..8624)
DNA (936bp) protein (312aa)
malate dehydrogenase
Malate dehydrogenase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E951_METEZ
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_924603_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8784..9593
DNA (810bp) protein (270aa)
tRNA pseudouridine synthase A
tRNA pseudouridine synthase A n=1 Tax=uncultured archaeon RepID=Q2VP68_9ARCH
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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9602..10618
DNA (1017bp) protein (339aa)
putative RNA methylase
Putative RNA methylase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MD95_9EURY
Putative DNA modification methylase {ECO:0000313|EMBL:KCZ73311.1}; EC=2.1.1.213 {ECO:0000313|EMBL:KCZ73311.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_8
unknown

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comp(10724..11623)
DNA (900bp) protein (300aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LP93_SYNFM
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_924603_9
unknown

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11797..12186
DNA (390bp) protein (130aa)

This feature has no annotations

SR-VP_26_10_2020_1_100CM_scaffold_924603_10
uncultured Acetothermia bacterium, Acetothermia, Bacteria

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12193..14151
DNA (1959bp) protein (653aa)
peptidase S9 prolyl oligopeptidase active site domain-containing protein
Peptidase, S9A/B/C family, catalytic domain protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SJG4_9BACT
Peptidase, S9A/B/C family, catalytic domain protein {ECO:0000313|EMBL:BAL56300.1}; TaxID=236499 species="Bacteria; Acetothermia; environmental samples.;" source="uncultured Acetothermia bacterium.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_11
unknown

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14538..15434
DNA (897bp) protein (299aa)
hypothetical protein
Response regulator receiver domain protein id=3899805 bin=GWF2_Bacteroidetes_38_335 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
Marine sediment metagenome DNA, contig: S12H4_S03371 {ECO:0000313|EMBL:GAI91081.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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15990..17255
DNA (1266bp) protein (422aa)
glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=GSA_METMA
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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17252..18229
DNA (978bp) protein (326aa)
hydroxymethylbilane synthase (EC:2.5.1.61)
Probable porphobilinogen deaminase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E721_METMS
Probable porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_14
unknown

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18189..18926
DNA (738bp) protein (246aa)
uroporphyrin-III C-methyltransferase
Uroporphyrin-III C-methyltransferase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KX65_METHD
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_924603_15
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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18928..19725
DNA (798bp) protein (266aa)
uroporphyrinogen III synthase HEM4
UPI0003D1A666 related cluster n=1 Tax=unknown RepID=UPI0003D1A666
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2020_1_100CM_scaffold_924603_16

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20222..20437
DNA (216bp) protein (72aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
SR-VP_26_10_2020_1_100CM_scaffold_924603_17

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20594..20827
DNA (234bp) protein (78aa)
PilT-like protein
Ribonuclease VapC n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LBZ9_THEPS
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
SR-VP_26_10_2020_1_100CM_scaffold_924603_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(21393..23102)
DNA (1710bp) protein (570aa)
hypothetical protein
Conserved repeat domain protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XK80_METZD
Conserved repeat protein {ECO:0000313|EMBL:KCZ72888.1}; Flags: Precursor;; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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23278..23448
DNA (171bp) protein (57aa)
preprotein translocase subunit SecG
Preprotein translocase subunit SecG n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQ81_METZD
Preprotein translocase subunit SecG {ECO:0000256|HAMAP-Rule:MF_00751}; Protein transport protein Sec61 subunit beta homolog {ECO:0000256|HAMAP-Rule:MF_00751}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_20
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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23527..24342
DNA (816bp) protein (272aa)
shikimate 5-dehydrogenase
Shikimate dehydrogenase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KSY5_METHD
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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24339..24875
DNA (537bp) protein (179aa)
prephenate dehydrogenase
UPI0003D1BFE7 related cluster n=1 Tax=unknown RepID=UPI0003D1BFE7
Prephenate dehydrogenase {ECO:0000313|EMBL:KCZ73280.1}; EC=1.3.1.12 {ECO:0000313|EMBL:KCZ73280.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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24945..25640
DNA (696bp) protein (232aa)
prephenate dehydrogenase
Prephenate dehydrogenase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MC84_9EURY
Prephenate dehydrogenase {ECO:0000313|EMBL:KCZ73280.1}; EC=1.3.1.12 {ECO:0000313|EMBL:KCZ73280.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2020_1_100CM_scaffold_924603_23
unknown

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25694..25930
DNA (237bp) protein (79aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2020_1_100CM_scaffold_924603_24
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(25942..27420)
DNA (1479bp) protein (493aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB12431.1}; TaxID=523844 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina thermophila TM-1.;"
Displaying 24 items

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