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SR-VP_0-2_scaffold_141_2549158

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Displaying items 1-30 of 57 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_0-2_scaffold_141_2549158_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(1..1812)
DNA (1812bp) protein (604aa)
DNA-directed RNA polymerase subunit B' (EC:2.7.7.6)
DNA-directed RNA polymerase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q464Y6_METBF
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2549158_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(1805..3397)
DNA (1593bp) protein (531aa)
DNA-directed RNA polymerase, beta subunit/140 kD subunit n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L1D9_METHD
DNA-directed RNA polymerase, beta subunit/140 kD subunit
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2549158_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(3416..3673)
DNA (258bp) protein (86aa)
RNA polymerase Rpb5 (EC:2.7.7.6)
UPI0003D1B5D2 related cluster n=1 Tax=unknown RepID=UPI0003D1B5D2
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2549158_4
unknown

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comp(3678..3905)
DNA (228bp) protein (76aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2549158_trna_4
unknown

Not on your lists

comp(3694..3782)
DNA (89bp)
transferRNA Lys
SR-VP_0-2_scaffold_141_2549158_trna_1
unknown

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4033..4106
DNA (74bp)
transferRNA Val
SR-VP_0-2_scaffold_141_2549158_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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4920..7667
DNA (2748bp) protein (916aa)
acetyl-CoA synthetase / acetyltransferase (GNAT) family protein (EC:6.2.1.13)
Probable acetyl-CoA synthetase n=1 Tax=uncultured archaeon RepID=Q2Y4P6_9ARCH
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2549158_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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7792..8910
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I6D7_METCZ
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_2549158_7

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comp(8951..10444)
DNA (1494bp) protein (498aa)
Marine sediment metagenome DNA, contig: S06H3_S01135 {ECO:0000313|EMBL:GAI32132.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SR-VP_0-2_scaffold_141_2549158_8
unknown

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10806..10958
DNA (153bp) protein (51aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2549158_9
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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11277..12491
DNA (1215bp) protein (405aa)
Transposase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TH46_METAC
Integrase {ECO:0000313|EMBL:KKG61829.1}; TaxID=2209 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei (Methanosarcina frisia).;"
Mobile element protein
SR-VP_0-2_scaffold_141_2549158_10
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12496..13263
DNA (768bp) protein (256aa)
IstB helper protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TH54_METAC
ATPase AAA {ECO:0000313|EMBL:KKG47170.1}; TaxID=2209 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei (Methanosarcina frisia).;"
istB; IstB helper protein
SR-VP_0-2_scaffold_141_2549158_11
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14141..15520)
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI00036BF769
Uncharacterized protein {ECO:0000313|EMBL:KHD08690.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
SR-VP_0-2_scaffold_141_2549158_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16231..17004
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465B9_METBF
Uncharacterized protein {ECO:0000313|EMBL:KCZ71805.1}; Flags: Precursor;; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_0-2_scaffold_141_2549158_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17013..17657
DNA (645bp) protein (215aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71806.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_0-2_scaffold_141_2549158_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17642..18148
DNA (507bp) protein (169aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ71807.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_0-2_scaffold_141_2549158_15
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

18171..20519
DNA (2349bp) protein (783aa)
WD40 repeat protein n=1 Tax=uncultured archaeon A07HN63 RepID=V4XIE3_9ARCH
PQQ enzyme repeat-containing protein
Tax=RBG_16_Actinobacteria_64_13_curated
SR-VP_0-2_scaffold_141_2549158_16
Haloferax gibbonsii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20620..23238
DNA (2619bp) protein (873aa)
Uncharacterized protein n=1 Tax=Haloferax gibbonsii ATCC 33959 RepID=M0H8C7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ80038.1}; TaxID=1227459 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax gibbonsii ATCC 33959.;"
SR-VP_0-2_scaffold_141_2549158_17
unknown

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comp(23252..23611)
DNA (360bp) protein (120aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2549158_18
Methanobacterium sp. MB1, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

23648..24592
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Methanobacterium sp. MB1 RepID=U6E9J2_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDG64216.1}; TaxID=1379702 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium sp. MB1.;"
SR-VP_0-2_scaffold_141_2549158_19
unknown

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24608..25306
DNA (699bp) protein (233aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2549158_20
unknown

Not on your lists

25775..26044
DNA (270bp) protein (90aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2549158_21
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26242..27219
DNA (978bp) protein (326aa)
radical SAM protein n=1 Tax=Sulfolobus islandicus RepID=UPI000382956E
radical SAM protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
SR-VP_0-2_scaffold_141_2549158_22
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28333..28482)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IJD1_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:GAB61826.1}; TaxID=247490 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
SR-VP_0-2_scaffold_141_2549158_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(28479..28676)
DNA (198bp) protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73632.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_0-2_scaffold_141_2549158_24
unknown

Not on your lists

comp(29007..30002)
DNA (996bp) protein (332aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2549158_25
unknown

Not on your lists

30657..30857
DNA (201bp) protein (67aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_2549158_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(31076..31273)
DNA (198bp) protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73632.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_0-2_scaffold_141_2549158_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(31587..31976)
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73631.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_0-2_scaffold_141_2549158_28
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

32439..33686
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TPI9_METAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM05326.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
Displaying items 1-30 of 57 in total

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