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This organism can only be binned in the context of its binning project 09V250M02_2016_bjp_ig8144. Please contact the project owner (amano.yuki@jaea.go.jp) to become a member and gain access.

SR-VP_0-2_scaffold_141_3758109

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Displaying items 1-30 of 59 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_0-2_scaffold_141_3758109_trna_1
unknown

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58..131
DNA (74bp)
transferRNA Ile
SR-VP_0-2_scaffold_141_3758109_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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302..823
DNA (522bp) protein (174aa)
50S ribosomal protein L10e n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=RL10E_UNCMA
rpl10e; 50S ribosomal protein L10e
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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870..1496
DNA (627bp) protein (209aa)
Translation initiation factor 2 subunit beta n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=IF2B_METTP
translation initiation factor IF-2 subunit beta
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(1561..1830)
DNA (270bp) protein (90aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_4
GWB1_Spirochaetes_48_6_curated, Spirochaetes, Bacteria

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1991..4435
DNA (2445bp) protein (815aa)
Radical SAM domain protein id=3774914 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Radical SAM domain-containing protein
Tax=GWB1_Spirochaetes_48_6_curated
SR-VP_0-2_scaffold_141_3758109_5
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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4623..5336
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HKC5_METFS
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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5450..6364
DNA (915bp) protein (305aa)
Uncharacterized membrane-associated protein/domain-like protein n=1 Tax=Methanoregula boonei (strain 6A8) RepID=A7I502_METB6
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6461..7135)
DNA (675bp) protein (225aa)
3-dehydroquinate dehydratase I (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=AROD_METAC
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_0-2_scaffold_141_3758109_8
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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7385..7879
DNA (495bp) protein (165aa)
Phage shock protein C, PspC n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EA24_METEZ
phage shock protein C
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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7885..8574
DNA (690bp) protein (230aa)
Pentapeptide repeat protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XN74_METZD
pentapeptide repeat-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_10
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9018..10421)
DNA (1404bp) protein (468aa)
ATP-dependent DNA helicase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TNC1_METAC
recG; ATP-dependent DNA helicase
ATP-dependent DNA helicase {ECO:0000313|EMBL:AAM05757.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
SR-VP_0-2_scaffold_141_3758109_11
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10489..12141)
DNA (1653bp) protein (551aa)
Putative deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4M7W8_9EURY
Putative deoxyguanosinetriphosphate triphosphohydrolase {ECO:0000313|EMBL:AFV22365.1}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophilus R15.;"
putative deoxyguanosinetriphosphate triphosphohydrolase
SR-VP_0-2_scaffold_141_3758109_12
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(12138..12458)
DNA (321bp) protein (107aa)
Type IIS restriction enzyme n=1 Tax=Methanolobus psychrophilus R15 RepID=K4M7F0_9EURY
type IIS restriction enzyme
Type IIS restriction enzyme {ECO:0000313|EMBL:AFV22363.1}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophilus R15.;"
SR-VP_0-2_scaffold_141_3758109_13
RBG_16_Ignavibacteria_36_9_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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12741..13316
DNA (576bp) protein (192aa)
Bifunctional deaminase-reductase domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TSV5_9CHLR
bifunctional deaminase-reductase domain-containing protein
Tax=RBG_16_Ignavibacteria_36_9_curated
SR-VP_0-2_scaffold_141_3758109_14
Leptospira broomii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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13350..13880
DNA (531bp) protein (177aa)
Riboflavin biosynthesis protein RibD C-terminal domain protein n=1 Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0GMN2_9LEPT
Riboflavin biosynthesis protein RibD C-terminal domain protein {ECO:0000313|EMBL:EQA46588.1}; TaxID=1049789 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira broomii serovar Hurstbridge str. 5399.;"
hypothetical protein
SR-VP_0-2_scaffold_141_3758109_15
unknown

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13918..14214
DNA (297bp) protein (99aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_3758109_16
unknown

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comp(14411..14761)
DNA (351bp) protein (117aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_3758109_trna_2
unknown

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comp(14903..14977)
DNA (75bp)
transferRNA Glu
SR-VP_0-2_scaffold_141_3758109_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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15137..15589
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZY4_METHD
Uncharacterized protein {ECO:0000313|EMBL:KCZ70689.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_0-2_scaffold_141_3758109_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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15577..16095
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WG0_METBU
Uncharacterized protein {ECO:0000313|EMBL:KCZ70690.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_0-2_scaffold_141_3758109_19
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(16157..16396)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAM4_METMS
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_20
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(16437..16934)
DNA (498bp) protein (166aa)
aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase regulatory chain n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=PYRI_METTP
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_21
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(16931..17842)
DNA (912bp) protein (304aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZH6_METCG
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_22
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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17916..18632
DNA (717bp) protein (239aa)
Conserved hypothetical membrane protein, peptidase family M50 n=1 Tax=uncultured archaeon RepID=D1JE55_9ARCH
Conserved hypothetical membrane protein, peptidase family M50
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_3758109_23
CG_Elusi_05, Elusimicrobia, Bacteria

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comp(18742..19074)
DNA (333bp) protein (111aa)
DNA polymerase, beta-like region id=4476356 bin=GWC2_Syntrophobacterales_56_13 species=Methanoregula formicica genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
putative nucleotidyltransferase
Tax=CG_Elusi_05
SR-VP_0-2_scaffold_141_3758109_24
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(19123..20808)
DNA (1686bp) protein (562aa)
Type I restriction-modification system, specificity subunit S (EC:3.1.21.3)
Type I restriction-modification system, specificity subunit S {ECO:0000313|EMBL:AKB51476.1}; EC=3.1.21.3 {ECO:0000313|EMBL:AKB51476.1};; TaxID=1434109 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri str. Wiesmoor.;"
Restriction modification system DNA specificity domain n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8MUR4_9CYAN
SR-VP_0-2_scaffold_141_3758109_25
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20805..22250)
DNA (1446bp) protein (482aa)
UPI0003D1B2C9 related cluster n=1 Tax=unknown RepID=UPI0003D1B2C9
DNA methyltransferase
DNA methyltransferase {ECO:0000313|EMBL:AJF06671.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
SR-VP_0-2_scaffold_141_3758109_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22689..23009
DNA (321bp) protein (107aa)
AbrB family transcriptional regulator n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZLW2_THELI
Looped-hinge helix DNA binding domain, AbrB family {ECO:0000313|EMBL:KCZ70915.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
AbrB family transcriptional regulator
SR-VP_0-2_scaffold_141_3758109_27
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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22969..23415
DNA (447bp) protein (149aa)
Putative nucleic acid-binding protein, contains PIN domain n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BLQ9_9EURY
putative nucleic acid-binding protein, contains PIN domain
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_0-2_scaffold_141_3758109_28
Vibrio sinaloensis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23417..25987)
DNA (2571bp) protein (857aa)
Type I restriction enzyme EcoEI R protein n=1 Tax=Enterobacter cloacae UCICRE 3 RepID=V3H783_ENTCL
DEAD/DEAH box helicase {ECO:0000313|EMBL:KGY10343.1}; TaxID=379097 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sinaloensis.;"
type I restriction-modification system restriction
Displaying items 1-30 of 59 in total

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