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SRVP18_trench_6_60cm_Methanoperedens_41_6

SRVP18_trench_6_60cm_unknown_41_6
In projects: SRVP18_trench_6_60cm  |  MpSRVP  |  Mp  |  diaphorachaeota  |  archaea_ggkbase  |  borg_methanoperedens_collection_2023  |  mp_ece

Consensus taxonomy:

Metagenomic Context

Parent: SRVP18_trench_6_60cm_UNK

Properties

Avg. coverage: 5.84 Longest contig: 13.87 Kbp Bin length: 1.50 Mbp GC content: 41.37 %
Contigs count: 371 Features count: 2060 rRNAs count: 0 tRNAs count: 26

Genome completeness

near complete RP 22 / 55 MC: 3 BSCG 16 / 51 ASCG 31 / 38 MC: 1

Description

MetaBAT_24

Displaying items 151-200 of 371 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SRVP18_trench_6_60cm_scaffold_92851 4 2297 bp 42.36 5.62 89.73
SRVP18_trench_6_60cm_scaffold_113661 1 1092 bp 41.30 5.63 97.53
SRVP18_trench_6_60cm_scaffold_23351 5 3013 bp 43.28 5.63 73.88
SRVP18_trench_6_60cm_scaffold_59964 3 3064 bp 46.83 5.63 84.20
SRVP18_trench_6_60cm_scaffold_11378
Species: Methanolobus tindarius (50%)
2 4741 bp 39.87 5.63 95.93
SRVP18_trench_6_60cm_scaffold_16073 10 5987 bp 42.59 5.64 79.62
SRVP18_trench_6_60cm_scaffold_23440 3 3005 bp 40.57 5.64 85.86
SRVP18_trench_6_60cm_scaffold_78290 3 1383 bp 42.66 5.64 95.44
SRVP18_trench_6_60cm_scaffold_24426 7 2923 bp 44.27 5.64 93.12
SRVP18_trench_6_60cm_scaffold_11352 12 9205 bp 39.68 5.64 77.53
SRVP18_trench_6_60cm_scaffold_20526
Species: Candidatus Methanoperedens nitroreducens (57.14%)
7 3966 bp 42.64 5.64 90.44
SRVP18_trench_6_60cm_scaffold_23552 5 5042 bp 42.58 5.65 93.71
SRVP18_trench_6_60cm_scaffold_15546 6 4502 bp 44.34 5.66 82.50
SRVP18_trench_6_60cm_scaffold_36195 4 2652 bp 36.76 5.66 83.82
SRVP18_trench_6_60cm_scaffold_28907 9 4019 bp 38.24 5.67 87.46
SRVP18_trench_6_60cm_scaffold_10997 6 4841 bp 42.18 5.67 88.00
SRVP18_trench_6_60cm_scaffold_11825 6 4633 bp 40.38 5.67 92.92
SRVP18_trench_6_60cm_scaffold_28830 6 3229 bp 45.22 5.67 85.20
SRVP18_trench_6_60cm_scaffold_64806
Species: Candidatus Omnitrophus sp. SKK-01 (50%)
2 1559 bp 42.46 5.68 99.10
SRVP18_trench_6_60cm_scaffold_14321 7 7739 bp 40.75 5.68 93.93
SRVP18_trench_6_60cm_scaffold_25434 6 2849 bp 42.86 5.69 90.98
SRVP18_trench_6_60cm_scaffold_33539 4 3296 bp 41.29 5.69 86.65
SRVP18_trench_6_60cm_scaffold_17993 6 5500 bp 42.49 5.70 85.53
SRVP18_trench_6_60cm_scaffold_35610
Order: Methanosarcinales (60%)
5 3238 bp 42.84 5.70 78.20
SRVP18_trench_6_60cm_scaffold_4963 11 7877 bp 41.39 5.71 93.88
SRVP18_trench_6_60cm_scaffold_9040 8 5463 bp 43.38 5.71 94.56
SRVP18_trench_6_60cm_scaffold_13453
Order: Methanosarcinales (50%)
6 4281 bp 41.81 5.71 95.37
SRVP18_trench_6_60cm_scaffold_86152 7 2389 bp 41.19 5.71 89.03
SRVP18_trench_6_60cm_scaffold_42479 4 2046 bp 42.18 5.72 92.96
SRVP18_trench_6_60cm_scaffold_14280 7 5296 bp 43.26 5.72 75.40
SRVP18_trench_6_60cm_scaffold_48124 5 2541 bp 41.56 5.73 86.19
SRVP18_trench_6_60cm_scaffold_24655 6 5654 bp 42.85 5.73 88.88
SRVP18_trench_6_60cm_scaffold_13506 5 4270 bp 41.26 5.73 73.56
SRVP18_trench_6_60cm_scaffold_19805 5 3343 bp 39.90 5.74 85.07
SRVP18_trench_6_60cm_scaffold_6586
Phylum: Euryarchaeota (50%)
8 6606 bp 44.35 5.74 86.33
SRVP18_trench_6_60cm_scaffold_12674 6 4434 bp 40.55 5.75 90.93
SRVP18_trench_6_60cm_scaffold_25514
Phylum: Euryarchaeota (66.67%)
3 2844 bp 42.51 5.75 84.28
SRVP18_trench_6_60cm_scaffold_16398 6 3777 bp 42.12 5.76 96.11
SRVP18_trench_6_60cm_scaffold_8493
Domain: Archaea (50%)
4 6176 bp 43.64 5.76 77.53
SRVP18_trench_6_60cm_scaffold_66012 7 4013 bp 38.30 5.76 71.24
SRVP18_trench_6_60cm_scaffold_6671 10 9148 bp 42.33 5.77 93.89
SRVP18_trench_6_60cm_scaffold_49247 7 4227 bp 39.48 5.78 88.36
SRVP18_trench_6_60cm_scaffold_26141 4 2801 bp 41.77 5.78 83.65
SRVP18_trench_6_60cm_scaffold_13320
Class: Methanomicrobia (60%)
10 8706 bp 38.61 5.79 83.56
SRVP18_trench_6_60cm_scaffold_19352 5 3394 bp 43.99 5.79 93.69
SRVP18_trench_6_60cm_scaffold_28240 5 5026 bp 38.98 5.79 76.94
SRVP18_trench_6_60cm_scaffold_27075
Species: Methanosarcina barkeri (50%)
2 3578 bp 42.79 5.79 99.94
SRVP18_trench_6_60cm_scaffold_17430 5 4199 bp 38.63 5.79 95.09
SRVP18_trench_6_60cm_scaffold_9807 5 5191 bp 43.52 5.81 87.21
SRVP18_trench_6_60cm_scaffold_25932 4 2814 bp 44.56 5.81 71.00
Displaying items 151-200 of 371 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.