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SRVP18_trench_6_60cm_Methanoperedens_41_6

SRVP18_trench_6_60cm_unknown_41_6
In projects: SRVP18_trench_6_60cm  |  MpSRVP  |  Mp  |  diaphorachaeota  |  archaea_ggkbase  |  borg_methanoperedens_collection_2023  |  mp_ece

Consensus taxonomy:

Metagenomic Context

Parent: SRVP18_trench_6_60cm_UNK

Properties

Avg. coverage: 5.84 Longest contig: 13.87 Kbp Bin length: 1.50 Mbp GC content: 41.37 %
Contigs count: 371 Features count: 2060 rRNAs count: 0 tRNAs count: 26

Genome completeness

near complete RP 22 / 55 MC: 3 BSCG 16 / 51 ASCG 31 / 38 MC: 1

Description

MetaBAT_24

Displaying items 201-250 of 371 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SRVP18_trench_6_60cm_scaffold_20447
Species: Candidatus Methanoperedens nitroreducens (60%)
5 3279 bp 38.43 5.81 72.55
SRVP18_trench_6_60cm_scaffold_28561 5 3847 bp 44.22 5.81 96.07
SRVP18_trench_6_60cm_scaffold_45946 6 2634 bp 44.99 5.81 72.67
SRVP18_trench_6_60cm_scaffold_29236 8 4643 bp 39.56 5.82 62.80
SRVP18_trench_6_60cm_scaffold_24914 7 3657 bp 42.66 5.82 80.48
SRVP18_trench_6_60cm_scaffold_11812 9 7834 bp 40.62 5.82 84.86
SRVP18_trench_6_60cm_scaffold_13998 7 4174 bp 36.46 5.82 64.18
SRVP18_trench_6_60cm_scaffold_42993 2 2031 bp 42.29 5.83 98.82
SRVP18_trench_6_60cm_scaffold_27289 7 4167 bp 43.72 5.83 82.51
SRVP18_trench_6_60cm_scaffold_15436
Phylum: Euryarchaeota (50%)
8 4789 bp 47.25 5.83 85.07
SRVP18_trench_6_60cm_scaffold_17026
Phylum: Euryarchaeota (50%)
10 7444 bp 41.90 5.84 86.36
SRVP18_trench_6_60cm_scaffold_10529 6 5959 bp 42.46 5.84 95.30
SRVP18_trench_6_60cm_scaffold_6426 8 6702 bp 42.32 5.84 80.08
SRVP18_trench_6_60cm_scaffold_77974 1 1386 bp 42.14 5.84 93.29
SRVP18_trench_6_60cm_scaffold_15744 5 3874 bp 41.71 5.85 75.43
SRVP18_trench_6_60cm_scaffold_21949 7 4894 bp 42.07 5.85 87.41
SRVP18_trench_6_60cm_scaffold_15425 8 3920 bp 43.83 5.85 91.22
SRVP18_trench_6_60cm_scaffold_30641 7 4146 bp 40.81 5.86 82.78
SRVP18_trench_6_60cm_scaffold_12728 5 5866 bp 41.85 5.86 91.90
SRVP18_trench_6_60cm_scaffold_7205 11 8342 bp 38.25 5.86 93.97
SRVP18_trench_6_60cm_scaffold_28581
Species: Candidatus Methanoperedens nitroreducens (60%)
5 5567 bp 42.25 5.87 83.53
SRVP18_trench_6_60cm_scaffold_12231 13 10612 bp 42.38 5.88 79.44
SRVP18_trench_6_60cm_scaffold_31111 3 2500 bp 44.92 5.88 99.84
SRVP18_trench_6_60cm_scaffold_31369 4 3112 bp 42.71 5.88 88.21
SRVP18_trench_6_60cm_scaffold_31562 5 3586 bp 39.07 5.90 77.30
SRVP18_trench_6_60cm_scaffold_15122
Order: Methanosarcinales (60%)
5 3969 bp 38.80 5.90 78.61
SRVP18_trench_6_60cm_scaffold_21452 5 3176 bp 37.44 5.90 79.16
SRVP18_trench_6_60cm_scaffold_27816 3 2689 bp 42.28 5.91 97.17
SRVP18_trench_6_60cm_scaffold_13041
Genus: Methanosarcina (60%)
5 4360 bp 36.61 5.92 98.26
SRVP18_trench_6_60cm_scaffold_21917 7 4639 bp 40.59 5.92 82.52
SRVP18_trench_6_60cm_scaffold_33660 7 2376 bp 42.30 5.93 83.71
SRVP18_trench_6_60cm_scaffold_24885 11 7971 bp 42.68 5.93 74.11
SRVP18_trench_6_60cm_scaffold_72461 6 3060 bp 42.94 5.93 89.71
SRVP18_trench_6_60cm_scaffold_30365 4 5129 bp 42.31 5.94 80.89
SRVP18_trench_6_60cm_scaffold_13398
Order: Methanosarcinales (71.43%)
7 4291 bp 36.17 5.94 84.88
SRVP18_trench_6_60cm_scaffold_45150 8 5350 bp 43.29 5.94 85.46
SRVP18_trench_6_60cm_scaffold_38754 5 2951 bp 42.97 5.95 79.50
SRVP18_trench_6_60cm_scaffold_25163 5 2871 bp 39.78 5.96 82.86
SRVP18_trench_6_60cm_scaffold_10790 10 6440 bp 36.55 5.96 96.80
SRVP18_trench_6_60cm_scaffold_5026 10 7822 bp 40.12 5.96 96.92
SRVP18_trench_6_60cm_scaffold_10339 7 5575 bp 41.24 5.97 91.16
SRVP18_trench_6_60cm_scaffold_17905 3 3565 bp 44.68 5.97 99.72
SRVP18_trench_6_60cm_scaffold_8739 8 5571 bp 44.48 5.98 92.30
SRVP18_trench_6_60cm_scaffold_23380 5 3011 bp 37.79 5.98 72.83
SRVP18_trench_6_60cm_scaffold_24308
Species: Candidatus Methanoperedens nitroreducens (50%)
4 2933 bp 41.83 5.98 80.23
SRVP18_trench_6_60cm_scaffold_47721 3 2327 bp 42.54 5.99 88.05
SRVP18_trench_6_60cm_scaffold_76575 3 1403 bp 42.48 5.99 80.83
SRVP18_trench_6_60cm_scaffold_23120 3 3030 bp 46.30 5.99 99.90
SRVP18_trench_6_60cm_scaffold_23458 3 4898 bp 45.81 6.00 99.96
SRVP18_trench_6_60cm_scaffold_10981 9 4844 bp 43.97 6.01 90.79
Displaying items 201-250 of 371 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.