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SR-VP_26_10_2019_2_100cm_scaffold_5164

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_5164_1

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comp(1..171)
DNA (171bp) protein (57aa)
Transposase n=1 Tax=uncultured archaeon GZfos27B6 RepID=Q64BG7_9ARCH
transposase, IS4
Transposase {ECO:0000313|EMBL:AAU83260.1}; TaxID=285385 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos27B6.;"
SR-VP_26_10_2019_2_100cm_scaffold_5164_2
unknown

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comp(177..593)
DNA (417bp) protein (139aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_5164_3
unknown

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678..1163
DNA (486bp) protein (162aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_5164_4
unknown

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1316..2239
DNA (924bp) protein (308aa)
Malate dehydrogenase n=2 Tax=Methanosarcina mazei RepID=MDH_METMA
Malate dehydrogenase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5164_5
unknown

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2301..2588
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TIY7_METAC
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5164_6
unknown

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2603..3619
DNA (1017bp) protein (339aa)
Flap structure-specific endonuclease (EC:3.-.-.-)
Flap endonuclease 1 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MCN8_9EURY
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5164_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3616..4635)
DNA (1020bp) protein (340aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388}; Short=GAPDH {ECO:0000256|HAMAP-Rule:MF_00559};; EC=1.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388};; NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1B3C2 related cluster n=1 Tax=unknown RepID=UPI0003D1B3C2
glyceraldehyde-3-phosphate dehydrogenase
SR-VP_26_10_2019_2_100cm_scaffold_5164_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4663..4836)
DNA (174bp) protein (58aa)
Putative RNA-binding protein {ECO:0000313|EMBL:KCZ72418.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_2_100cm_scaffold_5164_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4895..5797
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPZ6_METZD
Putative acyltransferase {ECO:0000313|EMBL:KCZ72419.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_5164_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5854..6570
DNA (717bp) protein (239aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73182.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_2_100cm_scaffold_5164_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6628..8328)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TMT4_METAC
Uncharacterized protein {ECO:0000313|EMBL:KCZ72495.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_5164_12
unknown

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comp(8354..8641)
DNA (288bp) protein (96aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_5164_13
unknown

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8689..9438
DNA (750bp) protein (250aa)
Hypothetical DUF75 protein n=1 Tax=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) RepID=Q6L213_PICTO
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_5164_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9467..10081)
DNA (615bp) protein (205aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Endonuclease III n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KSY0_METHD
putative endoIII-related endonuclease
SR-VP_26_10_2019_2_100cm_scaffold_5164_15
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

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comp(10105..10521)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI0003713826
hypothetical protein
Tax=RBG_16_OP11_Levybacteria_35_11_curated
SR-VP_26_10_2019_2_100cm_scaffold_5164_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(10523..10924)
DNA (402bp) protein (134aa)
Putative nucleotidyltransferase {ECO:0000313|EMBL:KCZ71006.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_2_100cm_scaffold_5164_17
unknown

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11073..11582
DNA (510bp) protein (170aa)

This feature has no annotations

Displaying 17 items

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