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SR-VP_26_10_2019_2_100cm_scaffold_3325

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_3325_1
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2..97
DNA (96bp) protein (32aa)
Tax=RBG_16_Desulfobacca_60_12_curated
SR-VP_26_10_2019_2_100cm_scaffold_3325_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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373..681
DNA (309bp) protein (103aa)
UPI0003D1B007 related cluster n=1 Tax=unknown RepID=UPI0003D1B007
Uncharacterized protein {ECO:0000313|EMBL:KCZ70794.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3325_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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732..1553
DNA (822bp) protein (274aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=HIS6_METAC
hisF; imidazole glycerol phosphate synthase subunit HisF
SR-VP_26_10_2019_2_100cm_scaffold_3325_4
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1556..2548)
DNA (993bp) protein (331aa)
Putative membrane CBS domain-containing protein n=1 Tax=Clostridium intestinale URNW RepID=U2PY15_9CLOT
Putative membrane CBS domain-containing protein {ECO:0000313|EMBL:ERK28684.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3325_5
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2913..3089)
DNA (177bp) protein (59aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3325_6
unknown

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3203..3388
DNA (186bp) protein (62aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3325_7
unknown

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3396..4841
DNA (1446bp) protein (482aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3325_8
unknown

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4880..5101
DNA (222bp) protein (74aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3325_9
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5052..6143)
DNA (1092bp) protein (364aa)
Radical SAM domain protein n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J1V8_DESRM
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ABO49061.1}; TaxID=349161 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum reducens (strain MI-1).;"
SR-VP_26_10_2019_2_100cm_scaffold_3325_10
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6158..6889)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI000371FA8B
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:CEO08504.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
deoxycytidine deaminase-like protein
SR-VP_26_10_2019_2_100cm_scaffold_3325_11
unknown

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comp(6994..7632)
DNA (639bp) protein (213aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3325_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7682..8926)
DNA (1245bp) protein (415aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E742_METMS
SR-VP_26_10_2019_2_100cm_scaffold_3325_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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9028..9603
DNA (576bp) protein (192aa)
Peptidase S26B, signal peptidase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MF43_9EURY
Signal peptidase I {ECO:0000313|EMBL:KCZ72551.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
peptidase S26B, signal peptidase
SR-VP_26_10_2019_2_100cm_scaffold_3325_14
unknown

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comp(9592..10833)
DNA (1242bp) protein (414aa)
ORC1-type DNA replication protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MD82_9EURY
cell division control protein 6
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3325_15
unknown

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comp(11375..11656)
DNA (282bp) protein (94aa)
UPF0147 protein Mtc_0431 n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I459_METCZ
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3325_16
unknown

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11696..12109
DNA (414bp) protein (138aa)
Sjogrens syndrome scleroderma autoantigen 1 n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B953_METTP
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3325_17
unknown

Not on your lists

comp(12136..13623)
DNA (1488bp) protein (496aa)
UPI0003D1C530 related cluster n=1 Tax=unknown RepID=UPI0003D1C530
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3325_18
unknown

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comp(13620..13721)
DNA (102bp) protein (34aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3325_19
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(13733..14668)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2ERG9_EMTOG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK02272.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
SR-VP_26_10_2019_2_100cm_scaffold_3325_20
unknown

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comp(14661..14888)
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWX4_9BACT
Marine sediment metagenome DNA, contig: S12H4_S17891 {ECO:0000313|EMBL:GAJ11574.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SR-VP_26_10_2019_2_100cm_scaffold_3325_21
unknown

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comp(14970..15644)
DNA (675bp) protein (225aa)
Phosphoglycolate phosphatase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L201_METHD
sucrose-phosphate phosphatase-like hydrolase, Archaeal
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3325_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15662..15811)
DNA (150bp) protein (50aa)
DNA repair and recombination protein RadA n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W5M8_UNCMA
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
radA; DNA repair and recombination protein RadA
Displaying 22 items

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