ggKbase home page

SR-VP_26_10_2019_2_100cm_scaffold_3376

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_3376_1
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(3..128)
DNA (126bp) protein (42aa)
30S ribosomal protein S9 n=1 Tax=Thermococcus sp. (strain CGMCC 1.5172 / 4557) RepID=G0HIR0_THES4
rps9p; 30S ribosomal protein S9P
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3376_2
unknown

Not on your lists


comp(138..557)
DNA (420bp) protein (140aa)
50S ribosomal protein L13 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MLL7_9EURY
LSU ribosomal protein L13P
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3376_3
unknown

Not on your lists


comp(562..924)
DNA (363bp) protein (121aa)
50S ribosomal protein L18e n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IB00_METCZ
LSU ribosomal protein L18e
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3376_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1187..1321
DNA (135bp) protein (45aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ70413.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_2_100cm_scaffold_3376_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1334..2674)
DNA (1341bp) protein (447aa)
Tetratricopeptide repeat protein {ECO:0000313|EMBL:KCZ72518.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Tetratricopeptide TPR_1 repeat-containing protein id=4189484 bin=GWC2_Nitrospirae_57_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3376_6
unknown

Not on your lists

2799..3260
DNA (462bp) protein (154aa)
methylated-DNA/protein-cysteinemethyltransferase (EC:2.1.1.63)
Methylated-DNA/protein-cysteinemethyltransferase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E867_METMS
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3376_trna_1
unknown

Not on your lists

3288..3359
DNA (72bp)
transferRNA Arg
SR-VP_26_10_2019_2_100cm_scaffold_3376_7
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3463..4170
DNA (708bp) protein (236aa)
Predicted RecA-family ATPase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W872_UNCMA
RecA family ATPase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3376_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4174..4710)
DNA (537bp) protein (179aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3376_9
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4728..6122)
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000381145C
Na+/solute symporter
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3376_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6180..7031)
DNA (852bp) protein (284aa)
Response regulator receiver protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EBI8_METMS
response regulator receiver protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3376_11
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7093..8247)
DNA (1155bp) protein (385aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MJA7_9EURY
multi-sensor hybrid histidine kinase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3376_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8320..9777)
DNA (1458bp) protein (486aa)
UPI0003D1BAE5 related cluster n=1 Tax=unknown RepID=UPI0003D1BAE5
Uncharacterized protein {ECO:0000313|EMBL:KCZ72813.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3376_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9774..10586)
DNA (813bp) protein (271aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72813.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_2_100cm_scaffold_3376_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10631..12826)
DNA (2196bp) protein (732aa)
APHP domain-containing protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MFM7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KCZ72812.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
APHP domain-containing protein
SR-VP_26_10_2019_2_100cm_scaffold_3376_15
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12926..13171)
DNA (246bp) protein (82aa)
UPI0003D1C837 related cluster n=1 Tax=unknown RepID=UPI0003D1C837
Uncharacterized protein {ECO:0000313|EMBL:ETA66751.1}; Flags: Precursor;; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius DSM 2278.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3376_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13395..14075
DNA (681bp) protein (227aa)
ABC transporter ATP-binding protein n=2 Tax=Lachnospiraceae RepID=R6NPG1_9FIRM
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:KCZ72811.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
ABC transporter ATP-binding protein
SR-VP_26_10_2019_2_100cm_scaffold_3376_17
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14062..15231
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9XQA1_9EURY
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:KCZ72810.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_2_100cm_scaffold_3376_18
unknown

Not on your lists

comp(15247..15516)
DNA (270bp) protein (90aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3376_19
unknown

Not on your lists

comp(15455..15691)
DNA (237bp) protein (79aa)

This feature has no annotations

Displaying 20 items

View Taxonomy