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SR-VP_26_10_2019_2_100cm_scaffold_3809

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_2_100cm_scaffold_3809_1

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comp(3..128)
DNA (126bp) protein (42aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003606292
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_2
unknown

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comp(378..968)
DNA (591bp) protein (197aa)
CRISPR-associated protein Cas4 n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HIN3_METFS
CRISPR-associated protein Cas4
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_3
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

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comp(974..1267)
DNA (294bp) protein (98aa)
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HJB9_METFS
CRISPR-associated endoribonuclease Cas2
Tax=RBG_16_OP11_Levybacteria_35_11_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_4
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

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comp(1279..2247)
DNA (969bp) protein (323aa)
CRISPR-associated endonuclease Cas1 n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HGN5_METFS
CRISPR-associated endonuclease Cas1
Tax=RBG_16_OP11_Levybacteria_35_11_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_5
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

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comp(2235..2918)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HHC4_METFS
hypothetical protein
Tax=RBG_16_OP11_Levybacteria_35_11_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_6
Altiarchaeum hamiconexum, Altiarchaeum, Altiarchaeales, Euryarchaeota, Archaea

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comp(3381..5843)
DNA (2463bp) protein (821aa)
CRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HEM1_METFS
CRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD
Tax=Altiarchaeum hamiconexum
SR-VP_26_10_2019_2_100cm_scaffold_3809_7
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5845..6588)
DNA (744bp) protein (248aa)
CRISPR-associated protein Cas5 n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HIP2_METFS
CRISPR-associated protein Cas5
CRISPR-associated protein Cas5 {ECO:0000313|EMBL:AGB03158.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
SR-VP_26_10_2019_2_100cm_scaffold_3809_8
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(6623..7582)
DNA (960bp) protein (320aa)
CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HJD7_METFS
CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI
CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI {ECO:0000313|EMBL:AGB03159.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
SR-VP_26_10_2019_2_100cm_scaffold_3809_9
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7575..9722)
DNA (2148bp) protein (716aa)
CRISPR-associated protein, TM1802 family n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HGP1_METFS
CRISPR-associated protein, TM1802 family
CRISPR-associated protein, TM1802 family {ECO:0000313|EMBL:AGB03160.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
SR-VP_26_10_2019_2_100cm_scaffold_3809_10
unknown

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10395..10619
DNA (225bp) protein (75aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3809_11
unknown

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10603..10953
DNA (351bp) protein (117aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3809_12
unknown

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11080..12717
DNA (1638bp) protein (546aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46AR0_METBF
B12-binding domain/radical SAM domain protein, family
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_13
unknown

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12783..12893
DNA (111bp) protein (37aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3809_14
BJP_IG2102_Methanoregula_52_95, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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12959..13186
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3X6_DEHLB
hypothetical protein
Tax=BJP_IG2102_Methanoregula_52_95
SR-VP_26_10_2019_2_100cm_scaffold_3809_15
BJP_IG2102_Methanoregula_52_95, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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13158..13967
DNA (810bp) protein (270aa)
Multimeric flavodoxin WrbA-like protein n=1 Tax=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) RepID=Q2FN39_METHJ
multimeric flavodoxin WrbA-like protein
Tax=BJP_IG2102_Methanoregula_52_95
SR-VP_26_10_2019_2_100cm_scaffold_3809_16
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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14047..14589
DNA (543bp) protein (181aa)
PREDICTED: mucin-2-like, partial n=1 Tax=Danio rerio RepID=UPI0003838261
Uncharacterized protein {ECO:0000313|EMBL:AKB24716.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. MTP4.;"
Na-Ca exchanger/integrin-beta4
SR-VP_26_10_2019_2_100cm_scaffold_3809_17
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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14720..15178
DNA (459bp) protein (153aa)
Putative thioredoxin n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0N7K0_DESTT
thioredoxin
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3809_18
unknown

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15223..16482
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI00037FA1D9
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_19
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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16483..17208
DNA (726bp) protein (242aa)
Cytochrome c-type biogenesis protein n=1 Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AM53_NATGS
thiol:disulfide interchange protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3809_20
unknown

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17215..18606
DNA (1392bp) protein (464aa)
4Fe-4S ferredoxin id=14429178 bin=bin3_NC10 species=Deinococcus sp. 2009 genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_21
unknown

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18742..19224
DNA (483bp) protein (161aa)
Thioredoxin-related protein-like protein id=1250019 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
protein of unknown function DUF255
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_22
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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19226..21499
DNA (2274bp) protein (758aa)
Cytochrome c-type biogenesis protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QT27_9EURY
cytochrome c biogenesis factor
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_2_100cm_scaffold_3809_23
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(21596..22702)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6TXU6_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEA12995.1}; TaxID=2162 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium formicicum.;"
SR-VP_26_10_2019_2_100cm_scaffold_3809_24
unknown

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22744..23814
DNA (1071bp) protein (357aa)
Radical SAM domain protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAL9_METMS
radical SAM protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_2_100cm_scaffold_3809_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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23816..24217
DNA (402bp) protein (134aa)
Mov34/MPN/PAD-1 family protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAL8_METMS
Putative metal-dependent protease of the PAD1/JAB1 superfamily {ECO:0000313|EMBL:KCZ71755.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Mov34/MPN/PAD-1 family protein
SR-VP_26_10_2019_2_100cm_scaffold_3809_26
unknown

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comp(24265..24417)
DNA (153bp) protein (51aa)

This feature has no annotations

SR-VP_26_10_2019_2_100cm_scaffold_3809_27
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(24408..25001)
DNA (594bp) protein (198aa)
Phosphohexomutase n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AIL9_PYRYC
phosphohexomutase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
Displaying 27 items

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