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SR-VP_26_10_2019_C_40cm_scaffold_6735

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_C_40cm_scaffold_6735_16S_1
unknown

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comp(2..595)
DNA (594bp)
16S ribosomal RNA (16S rRNA)
SR-VP_26_10_2019_C_40cm_scaffold_6735_1
unknown

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comp(1478..1789)
DNA (312bp) protein (104aa)
50S ribosomal protein L12 n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PY50_METMA
rpl12p; 50S ribosomal protein L12
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_6735_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1811..2839)
DNA (1029bp) protein (343aa)
UPI0003D1A882 related cluster n=1 Tax=unknown RepID=UPI0003D1A882
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
rplP0; acidic ribosomal protein P0
SR-VP_26_10_2019_C_40cm_scaffold_6735_3
unknown

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comp(2840..3481)
DNA (642bp) protein (214aa)
50S ribosomal protein L1 n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=RL1_METBU
rpl1P; 50S ribosomal protein L1P
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_6735_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3994..4320)
DNA (327bp) protein (109aa)
Uncharacterized conserved protein UCP006577 n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1L3Y8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KCZ70362.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_6735_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4325..5044)
DNA (720bp) protein (240aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RYR3_THEOJ
Uncharacterized protein {ECO:0000313|EMBL:KCZ70363.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
4Fe-4S ferredoxin
SR-VP_26_10_2019_C_40cm_scaffold_6735_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5162..5740
DNA (579bp) protein (193aa)
AsnC/Lrp family transcriptional regulator n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YW62_METPS
Transcriptional regulator {ECO:0000313|EMBL:KCZ70364.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
AsnC/Lrp family transcriptional regulator
SR-VP_26_10_2019_C_40cm_scaffold_6735_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5882..6862)
DNA (981bp) protein (327aa)
UPI0003D1BDFF related cluster n=1 Tax=unknown RepID=UPI0003D1BDFF
Putative exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:KCZ72380.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
putative mRNA 3-end processing factor
SR-VP_26_10_2019_C_40cm_scaffold_6735_8
unknown

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comp(6873..7145)
DNA (273bp) protein (91aa)
Thioredoxin domain protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMT3_METZD
thioredoxin domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_26_10_2019_C_40cm_scaffold_6735_9
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7377..8513)
DNA (1137bp) protein (379aa)
Cation transporter n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PXG7_METMA
Cation transporter {ECO:0000313|EMBL:AKB15974.1}; TaxID=1434121 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina thermophila CHTI-55.;"
Cation transporter
Displaying 10 items

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