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SR-VP_26_10_2019_C_40cm_scaffold_1173

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_26_10_2019_C_40cm_scaffold_1173_1
RBG_16_OP11_Woesebacteria_34_12_curated, Woesebacteria, Microgenomates, Bacteria

Not on your lists

2..280
DNA (279bp) protein (93aa)
UPI0003D1B480 related cluster n=1 Tax=unknown RepID=UPI0003D1B480
nucleoid protein MC1
Tax=RBG_16_OP11_Woesebacteria_34_12_curated
SR-VP_26_10_2019_C_40cm_scaffold_1173_2
RBG_16_OP11_Levybacteria_35_11_curated, Levybacteria, Microgenomates, Bacteria

Not on your lists

443..1204
DNA (762bp) protein (254aa)
Hypothetical membrane protein, containing TPR repeats n=1 Tax=uncultured archaeon RepID=D1JD18_9ARCH
TPR domain protein, putative component of TonB system
Tax=RBG_16_OP11_Levybacteria_35_11_curated
SR-VP_26_10_2019_C_40cm_scaffold_1173_3
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1475..2713)
DNA (1239bp) protein (413aa)
Transposase, IS116/IS110/IS902 family n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BXL3_METCG
transposase, IS116/IS110/IS902 family
Transposase, IS116/IS110/IS902 family {ECO:0000313|EMBL:AEB68476.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
SR-VP_26_10_2019_C_40cm_scaffold_1173_4

Not on your lists

3180..3614
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9H6_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:CBH38756.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
ribonuclease III
SR-VP_26_10_2019_C_40cm_scaffold_1173_5
unknown

Not on your lists

3574..3780
DNA (207bp) protein (69aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1173_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3852..4409
DNA (558bp) protein (186aa)
Phosphatidate cytidylyltransferase family protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z278_METPS
Dolichol kinase {ECO:0000313|EMBL:KCZ73106.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
phosphatidate cytidylyltransferase family protein
SR-VP_26_10_2019_C_40cm_scaffold_1173_7
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

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4562..4963
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Dehalococcoides mccartyi DCMB5 RepID=M1RBR3_9CHLR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG06990.1}; TaxID=1193807 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides mccartyi DCMB5.;"
SR-VP_26_10_2019_C_40cm_scaffold_1173_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5141..6292
DNA (1152bp) protein (384aa)
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:KCZ72515.1}; EC=3.4.11.9 {ECO:0000313|EMBL:KCZ72515.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Peptidase M24 n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAD2_METEZ
peptidase M24
SR-VP_26_10_2019_C_40cm_scaffold_1173_9
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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6247..7164
DNA (918bp) protein (306aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01975, ECO:0000256|RuleBase:RU003653}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01975};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01975};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01975, ECO:0000256|RuleBase:RU003653};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01975}; Flags: Precursor;; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XMV1_METZD
SR-VP_26_10_2019_C_40cm_scaffold_1173_10
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7161..7940
DNA (780bp) protein (260aa)
UPI0003D1B00E related cluster n=1 Tax=unknown RepID=UPI0003D1B00E
Uncharacterized protein {ECO:0000313|EMBL:KCZ72513.1}; Flags: Precursor;; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_1173_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7974..9008
DNA (1035bp) protein (345aa)
RNA cap guanine-N2 methyltransferase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E6S8_METMS
RNA cap guanine-N2 methyltransferase {ECO:0000313|EMBL:KCZ72512.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RNA cap guanine-N2 methyltransferase
SR-VP_26_10_2019_C_40cm_scaffold_1173_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9234..10010
DNA (777bp) protein (259aa)
SPFH domain/band 7 protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BU94_METCG
Membrane protease subunit, stomatin/prohibitin {ECO:0000313|EMBL:KCZ73197.1}; Flags: Precursor;; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_26_10_2019_C_40cm_scaffold_1173_13
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10010..11281
DNA (1272bp) protein (424aa)
Nodulation efficiency protein NfeD n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E8D2_METMS
Membrane-bound serine protease (ClpP class) {ECO:0000313|EMBL:KCZ73196.1}; Flags: Precursor;; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Nodulation efficiency protein NfeD
SR-VP_26_10_2019_C_40cm_scaffold_1173_14

Not on your lists

11801..12649
DNA (849bp) protein (283aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JAW8_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:CBH39248.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
SR-VP_26_10_2019_C_40cm_scaffold_1173_15
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

12663..17747
DNA (5085bp) protein (1695aa)
Outer membrane protein n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXQ1_METHD
Uncharacterized protein {ECO:0000313|EMBL:AKB85201.1}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens MM1.;"
outer membrane protein
SR-VP_26_10_2019_C_40cm_scaffold_1173_16
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

17984..19918
DNA (1935bp) protein (645aa)
2-oxoacid:acceptor oxidoreductase, alpha subunit (EC:1.2.7.3)
2-oxoglutarate ferredoxin oxidoreductase subunit alpha n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVM2_9BACT
2-oxoglutarate ferredoxin oxidoreductase subunit alpha {ECO:0000313|EMBL:BAL59651.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
SR-VP_26_10_2019_C_40cm_scaffold_1173_17
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19908..20876
DNA (969bp) protein (323aa)
2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family (EC:1.2.7.3)
2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family {ECO:0000313|EMBL:AIF83305.1}; EC=1.2.7.3 {ECO:0000313|EMBL:AIF83305.1};; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
hypothetical protein n=1 Tax=unclassified candidate division pSL4 RepID=UPI00036441CB
SR-VP_26_10_2019_C_40cm_scaffold_1173_18
unknown

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comp(20878..22287)
DNA (1410bp) protein (470aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1173_19
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(22348..23733)
DNA (1386bp) protein (462aa)
16S rRNA m(5)C 967 methyltransferase (EC:2.1.1.-)
16S rRNA m(5)C 967 methyltransferase id=3904934 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_1173_20
GWF2_Melainabacteria_37_15_curated, Melainabacteria, Bacteria

Not on your lists

23794..24432
DNA (639bp) protein (213aa)
Flavoprotein WrbA, protein id=4299216 bin=GWF2_Melainabacteria_37_15 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
flavoprotein WrbA
Tax=GWF2_Melainabacteria_37_15_curated
SR-VP_26_10_2019_C_40cm_scaffold_1173_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

24429..25046
DNA (618bp) protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72924.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_26_10_2019_C_40cm_scaffold_1173_22
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

25046..25759
DNA (714bp) protein (238aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae bacterium COE1 RepID=R9KZT5_9FIRM
hypothetical protein
Tax=RBG_16_Aminicenantes_63_16_curated
SR-VP_26_10_2019_C_40cm_scaffold_1173_23
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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comp(25778..26452)
DNA (675bp) protein (225aa)
Putative uncharacterized protein id=1703015 bin=GWB2_Nitrospirae_rel_47_37 species=Thermoplasmatales archaeon SCGC AB-540-F20 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=RBG_16_Nitrospirae_43_8_curated
SR-VP_26_10_2019_C_40cm_scaffold_1173_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

26973..27797
DNA (825bp) protein (275aa)
Putative transcriptional regulator n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM67_NITGG
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFU57604.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
SR-VP_26_10_2019_C_40cm_scaffold_1173_25
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

27872..28453
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Haloquadratum walsbyi J07HQW2 RepID=U1NK13_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82376.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
SR-VP_26_10_2019_C_40cm_scaffold_1173_26
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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28886..29644
DNA (759bp) protein (253aa)
Indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TLP2_METAC
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_1173_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

29652..30836
DNA (1185bp) protein (395aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12ZK0_METBU
SR-VP_26_10_2019_C_40cm_scaffold_1173_28
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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30836..31621
DNA (786bp) protein (262aa)
Tryptophan synthase alpha chain n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KWM5_METHD
tryptophan synthase, alpha subunit
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_26_10_2019_C_40cm_scaffold_1173_29
unknown

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31789..32043
DNA (255bp) protein (85aa)

This feature has no annotations

SR-VP_26_10_2019_C_40cm_scaffold_1173_30
unknown

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comp(32282..32728)
DNA (447bp) protein (149aa)
DGPFAETKE family protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MCL0_9BURK
DGPFAETKE family protein
Tax=RBG_16_Euryarchaeota_41_19_curated
Displaying items 1-30 of 36 in total

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