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SR-VP_0-2_scaffold_141_5879685

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Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR-VP_0-2_scaffold_141_5879685_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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2..1477
DNA (1476bp) protein (492aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PAP0_METMZ
Kef-type K+ transport systems (NAD-binding component fused to domain related to exopolyphosphatase)
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_2
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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1667..4414
DNA (2748bp) protein (916aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
UPI0003D1AA03 related cluster n=1 Tax=unknown RepID=UPI0003D1AA03
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_3
unknown

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comp(4457..5017)
DNA (561bp) protein (187aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_5879685_4
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

5152..7356
DNA (2205bp) protein (735aa)
UPI0003D1BDA8 related cluster n=1 Tax=unknown RepID=UPI0003D1BDA8
DEAD/DEAH box helicase domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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7398..8342
DNA (945bp) protein (315aa)
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.89 {ECO:0000256|HAMAP-Rule:MF_01139};; Undecaprenyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; Undecaprenyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MAR7_9EURY
undecaprenyl diphosphate synthase
SR-VP_0-2_scaffold_141_5879685_6
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8352..9005)
DNA (654bp) protein (218aa)
Undecaprenyl pyrophosphate synthase {ECO:0000313|EMBL:KCZ70562.1}; EC=2.5.1.31 {ECO:0000313|EMBL:KCZ70562.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1A67A related cluster n=1 Tax=unknown RepID=UPI0003D1A67A
undecaprenyl pyrophosphate synthetase
SR-VP_0-2_scaffold_141_5879685_7
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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9066..10418
DNA (1353bp) protein (451aa)
TIGR00297 family protein n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KYM7_METHD
TIGR00297 family protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_8

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comp(10485..11096)
DNA (612bp) protein (204aa)
hypothetical protein, partial n=4 Tax=Aminicenantes RepID=UPI00037AA295
Conserved hypothetical membrane protein, DUF1282 family {ECO:0000313|EMBL:CBH38588.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
hypothetical protein
SR-VP_0-2_scaffold_141_5879685_trna_1
unknown

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11458..11531
DNA (74bp)
transferRNA Arg
SR-VP_0-2_scaffold_141_5879685_9
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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11545..12357
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W4C5_UNCMA
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
SR-VP_0-2_scaffold_141_5879685_10
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(12496..12795)
DNA (300bp) protein (100aa)
Nucleoid protein MC1 n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MDV3_9EURY
nucleoid protein MC1
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_11
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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13110..14513
DNA (1404bp) protein (468aa)
L-threonine 3-O-phosphate decarboxylase (EC:4.1.1.81)
Aminotransferase class I and II n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNP5_METZD
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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14510..15433
DNA (924bp) protein (308aa)
Probable cobalamin biosynthesis protein CobD n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNI5_METZD
Probable cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
cobalamin biosynthesis protein CobD
SR-VP_0-2_scaffold_141_5879685_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

15449..16060
DNA (612bp) protein (204aa)
UPI0003D1C28C related cluster n=1 Tax=unknown RepID=UPI0003D1C28C
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_14
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16057..16824
DNA (768bp) protein (256aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Cobalamin synthase n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E6A8_METEZ
cobalamin 5'-phosphate synthase
SR-VP_0-2_scaffold_141_5879685_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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16824..17420
DNA (597bp) protein (199aa)
adenosylcobinamide-phosphate guanylyltransferase (EC:2.7.7.62)
Adenosylcobinamide-phosphate guanylyltransferase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q465W2_METBF
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(17417..18646)
DNA (1230bp) protein (410aa)
Phytoene dehydrogenase-like oxidoreductase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KYW9_METHD
phytoene dehydrogenase-like oxidoreductase
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(18932..21043)
DNA (2112bp) protein (704aa)
Phosphoesterase, RecJ domain protein n=1 Tax=Methanosaeta thermophila (strain DSM 6194 / PT) RepID=A0B987_METTP
phosphoesterase domain-containing protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_18
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(21098..23983)
DNA (2886bp) protein (962aa)
Superfamily I DNA and RNA helicase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8Q0V3_METMA
Uncharacterized protein {ECO:0000313|EMBL:KKH99424.1}; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.T.1A.1.;"
superfamily I DNA/RNA helicase
SR-VP_0-2_scaffold_141_5879685_19
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

24193..24807
DNA (615bp) protein (205aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Endonuclease III n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PWS9_METMZ
Endonuclease III
SR-VP_0-2_scaffold_141_5879685_20
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(24815..25672)
DNA (858bp) protein (286aa)
TIGR00162 family protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T9G2_9EURY
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
SR-VP_0-2_scaffold_141_5879685_21
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

25790..27493
DNA (1704bp) protein (568aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PTJ8_METMA
Uncharacterized protein {ECO:0000313|EMBL:KCZ72495.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_0-2_scaffold_141_5879685_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(27543..28259)
DNA (717bp) protein (239aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73182.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_0-2_scaffold_141_5879685_23
unknown

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28534..28719
DNA (186bp) protein (62aa)

This feature has no annotations

SR-VP_0-2_scaffold_141_5879685_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(28753..29592)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPZ6_METZD
Putative acyltransferase {ECO:0000313|EMBL:KCZ72419.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
SR-VP_0-2_scaffold_141_5879685_25
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

29707..29880
DNA (174bp) protein (58aa)
Putative RNA-binding protein {ECO:0000313|EMBL:KCZ72418.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
SR-VP_0-2_scaffold_141_5879685_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

29908..30930
DNA (1023bp) protein (341aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388}; Short=GAPDH {ECO:0000256|HAMAP-Rule:MF_00559};; EC=1.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388};; NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1B3C2 related cluster n=1 Tax=unknown RepID=UPI0003D1B3C2
glyceraldehyde-3-phosphate dehydrogenase
SR-VP_0-2_scaffold_141_5879685_27
Paenibacillus sp. P22, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(31029..31472)
DNA (444bp) protein (148aa)
phage tail protein n=1 Tax=Bacillus fordii RepID=UPI00036A4FB2
Uncharacterized conserved protein {ECO:0000313|EMBL:CDN42349.1}; TaxID=483908 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P22.;"
hypothetical protein
SR-VP_0-2_scaffold_141_5879685_28
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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comp(31482..31697)
DNA (216bp) protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW00737.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
Putative uncharacterized protein id=1847834 bin=GWD2_Chloroflexi_49_16 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
SR-VP_0-2_scaffold_141_5879685_29
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(31750..32673)
DNA (924bp) protein (308aa)
Flap structure-specific endonuclease (EC:3.-.-.-)
UPI0003D1B400 related cluster n=1 Tax=unknown RepID=UPI0003D1B400
Tax=RBG_16_Euryarchaeota_41_19_curated
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