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N2_066_000G1_scaffold_469

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
N2_066_000G1_scaffold_469_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(63..1256)
DNA (1194bp) protein (398aa)
Aspartate aminotransferase {ECO:0000313|EMBL:EIA16521.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EIA16521.1};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
aspC; aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase Tax=Clostridium perfringens NCTC 8239 RepID=B1RQ38_CLOPF
N2_066_000G1_scaffold_469_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1408..1668)
DNA (261bp) protein (87aa)
Stage V sporulation protein S Tax=Clostridium perfringens RepID=H7CX67_CLOPF
spoVS; stage V sporulation protein S
Stage V sporulation protein S {ECO:0000313|EMBL:EDT13823.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
N2_066_000G1_scaffold_469_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1886..3421)
DNA (1536bp) protein (512aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Ribonuclease Y Tax=Clostridium perfringens RepID=RNY_CLOP1
phosphodiesterase
N2_066_000G1_scaffold_469_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3658..4704)
DNA (1047bp) protein (349aa)
Protein RecA Tax=Clostridium perfringens RepID=RECA_CLOP1
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
N2_066_000G1_scaffold_469_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4840..5430)
DNA (591bp) protein (197aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EDT26224.1}; EC=2.7.8.5 {ECO:0000313|EMBL:EDT26224.1};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=Clostridium perfringens RepID=H7CX70_CLOPF
N2_066_000G1_scaffold_469_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5414..6751)
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Ribosomal protein S12 methylthiotransferase RimO Tax=Clostridium perfringens RepID=RIMO_CLOP1
tRNA modifying protein
N2_066_000G1_scaffold_469_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6820..9210)
DNA (2391bp) protein (797aa)
DNA translocase FtsK Tax=Clostridium perfringens NCTC 8239 RepID=B1RQ44_CLOPF
DNA translocase FtsK {ECO:0000313|EMBL:EIA16527.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
ftsK; DNA translocase FtsK
N2_066_000G1_scaffold_469_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9342..10031)
DNA (690bp) protein (230aa)
clpP; Clp protease (EC:3.4.21.92)
Clp protease {ECO:0000313|EMBL:EDT13829.1}; EC=3.4.21.92 {ECO:0000313|EMBL:EDT13829.1};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Clp protease Tax=Clostridium perfringens RepID=B1BG34_CLOPF
N2_066_000G1_scaffold_469_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10085..11281)
DNA (1197bp) protein (399aa)
aspartate kinase I (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Aspartokinase Tax=Clostridium perfringens RepID=H7CX74_CLOPF
N2_066_000G1_scaffold_469_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11295..11570)
DNA (276bp) protein (92aa)
PRC-barrel domain-containing protein Tax=Clostridium perfringens RepID=H7CX75_CLOPF
PRC-barrel domain-containing protein
PRC-barrel domain protein {ECO:0000313|EMBL:EDT26228.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
N2_066_000G1_scaffold_469_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11705..13813)
DNA (2109bp) protein (703aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Polyribonucleotide nucleotidyltransferase Tax=Clostridium perfringens RepID=B1BWW9_CLOPF
pnpA; polynucleotide phosphorylase
N2_066_000G1_scaffold_469_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13905..14168)
DNA (264bp) protein (88aa)
30S ribosomal protein S15 Tax=Clostridium perfringens RepID=RS15_CLOP1
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
N2_066_000G1_scaffold_469_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14284..15213)
DNA (930bp) protein (310aa)
ribF; bifunctional riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Riboflavin biosynthesis protein RibF Tax=Clostridium perfringens E str. JGS1987 RepID=B1BWX1_CLOPF
N2_066_000G1_scaffold_469_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15217..16101)
DNA (885bp) protein (295aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
tRNA pseudouridine synthase B Tax=Clostridium perfringens E str. JGS1987 RepID=B1BWX2_CLOPF
truB; tRNA pseudouridine synthase B
N2_066_000G1_scaffold_469_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16105..17058)
DNA (954bp) protein (318aa)
DHH subfamily 1 protein Tax=Clostridium perfringens CPE str. F4969 RepID=B1RII4_CLOPF
DHH subfamily 1 protein {ECO:0000313|EMBL:EDT26236.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
DHH subfamily 1 protein
N2_066_000G1_scaffold_469_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17062..17412)
DNA (351bp) protein (117aa)
Ribosome-binding factor A Tax=Clostridium perfringens RepID=RBFA_CLOP1
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
N2_066_000G1_scaffold_469_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17434..19473)
DNA (2040bp) protein (680aa)
Translation initiation factor IF-2 Tax=Clostridium perfringens RepID=IF2_CLOP1
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
N2_066_000G1_scaffold_469_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19504..19806)
DNA (303bp) protein (101aa)
Ribosomal protein L7Ae family protein Tax=Clostridium perfringens RepID=H7CX83_CLOPF
ribosomal protein L7Ae family protein
Ribosomal protein, L7Ae family {ECO:0000313|EMBL:EDT13816.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
N2_066_000G1_scaffold_469_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19799..20065)
DNA (267bp) protein (89aa)
Uncharacterized protein Tax=Clostridium perfringens RepID=H7CX84_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81394.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
N2_066_000G1_scaffold_469_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20093..21193)
DNA (1101bp) protein (367aa)
Transcription elongation factor NusA Tax=Clostridium perfringens RepID=H7CX85_CLOPF
nusA; transcription elongation factor NusA
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
N2_066_000G1_scaffold_469_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21213..21677)
DNA (465bp) protein (155aa)
Ribosome maturation factor RimP Tax=Clostridium perfringens RepID=RIMP_CLOP1
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
N2_066_000G1_scaffold_469_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21910..23511)
DNA (1602bp) protein (534aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
polC; DNA polymerase III PolC (EC:2.7.7.7)
DNA polymerase III polC-type Tax=Clostridium perfringens C str. JGS1495 RepID=B1BG20_CLOPF
Displaying 22 items

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