ggKbase home page

S_p1_S3_coassembly_k141_175422

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_175422_1
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

2..400
DNA (399bp) protein (133aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00036192C7
LPXTG-domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
S_p1_S3_coassembly_k141_175422_2
RIFOXYB2_FULL_Gammaproteobacteria_38_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

520..3765
DNA (3246bp) protein (1082aa)
Putative uncharacterized protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F9Z1_ACIC5
hypothetical protein
Tax=RIFOXYB2_FULL_Gammaproteobacteria_38_6_curated
S_p1_S3_coassembly_k141_175422_3
R_OD1_Yanofskybacteria_49_17, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

3885..4274
DNA (390bp) protein (130aa)
hypothetical protein Tax=Candidatus Microgenomatus auricola SCGC AAA011-E14 RepID=UPI000365E026
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_49_17_curated
S_p1_S3_coassembly_k141_175422_4
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

4408..5691
DNA (1284bp) protein (428aa)
Uncharacterized protein Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZK4_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
S_p1_S3_coassembly_k141_175422_5

Not on your lists

5748..6491
DNA (744bp) protein (248aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT91135.1}; Flags: Fragment;; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_45_13.;"
seg bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
S_p1_S3_coassembly_k141_175422_6
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

6505..7365
DNA (861bp) protein (287aa)
id=2604227 bin=GWC1_CPR2_39_9 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
S_p1_S3_coassembly_k141_175422_7
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

7394..9187
DNA (1794bp) protein (598aa)
seg bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
S_p1_S3_coassembly_k141_175422_8
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

9271..9708
DNA (438bp) protein (146aa)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_9
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

9953..10573
DNA (621bp) protein (207aa)
hypothetical protein
id=5226541 bin=RAAC3_TM7 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=RAAC3_TM7 organism_group=TM7
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
S_p1_S3_coassembly_k141_175422_10
R_OD1_Yanofskybacteria_42_49, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

10573..11268
DNA (696bp) protein (232aa)
Putative PolB-like 3'-5' exonuclease bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
3'-5' exonuclease, PolB
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_42_49_curated
S_p1_S3_coassembly_k141_175422_11
unknown

Not on your lists

comp(11285..11479)
DNA (195bp) protein (65aa)

This feature has no annotations

S_p1_S3_coassembly_k141_175422_12
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

11531..12271
DNA (741bp) protein (247aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1XFZ3_9BACT
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_13
unknown

Not on your lists

12320..12421
DNA (102bp) protein (34aa)

This feature has no annotations

S_p1_S3_coassembly_k141_175422_14
unknown

Not on your lists

12426..12668
DNA (243bp) protein (81aa)

This feature has no annotations

S_p1_S3_coassembly_k141_175422_15
RLO_RIF_OD1_13_41_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

12674..12916
DNA (243bp) protein (81aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_13_41_11_curated
S_p1_S3_coassembly_k141_175422_16
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(13257..15134)
DNA (1878bp) protein (626aa)
GTP-binding protein TypA/BipA bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
GTP-binding protein TypA/BipA
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_17
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


15838..16110
DNA (273bp) protein (91aa)
50S ribosomal protein L27 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rpmA; 50S ribosomal protein L27
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
S_p1_S3_coassembly_k141_175422_18
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(16187..16645)
DNA (459bp) protein (153aa)
50S ribosomal protein L9 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rplI; 50S ribosomal protein L9
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_19
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(16674..17915)
DNA (1242bp) protein (414aa)
Carboxyl-terminal protease bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_20
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(18069..18887)
DNA (819bp) protein (273aa)
Glycosyl transferase family 2 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
family 2 glycosyl transferase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_21
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(18961..20028)
DNA (1068bp) protein (356aa)
Cell envelope-related transcriptional attenuator bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
putative transcriptional regulator
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_22
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(20016..21104)
DNA (1089bp) protein (363aa)
Glycosyl transferase family protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
glycosyltransferase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
S_p1_S3_coassembly_k141_175422_23
R_OD1_Yanofskybacteria_42_49, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(21104..22654)
DNA (1551bp) protein (517aa)
O-antigen polymerase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
polymerase
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_42_49_curated
S_p1_S3_coassembly_k141_175422_24
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(22657..23472)
DNA (816bp) protein (272aa)
type 11 methyltransferase bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
type 11 methyltransferase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
S_p1_S3_coassembly_k141_175422_25
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(23462..24673)
DNA (1212bp) protein (404aa)
Putative uncharacterized protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Glycosyl transferase, group 1
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_26
R_OD1_Nomurabacteria_40_12, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(24670..25605)
DNA (936bp) protein (312aa)
patatin Tax=Amycolatopsis balhimycina RepID=UPI00037301C3
patatin-like phospholipase
Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_40_12_curated
S_p1_S3_coassembly_k141_175422_27
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(25610..26590)
DNA (981bp) protein (327aa)
Glycosyl transferase, family 2 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
glycosyltransferase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_28
R_OD1_Yanofskybacteria_43_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(26637..26906)
DNA (270bp) protein (90aa)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_43_22_curated
S_p1_S3_coassembly_k141_175422_29
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(26975..28048)
DNA (1074bp) protein (358aa)
Glycosyl transferase group 1 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
glycosyl transferase group 1
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
S_p1_S3_coassembly_k141_175422_30
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(28809..29810)
DNA (1002bp) protein (334aa)
Rod shape-determining protein mreB bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rod shape-determining protein MreB
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
Displaying items 1-30 of 98 in total

View Taxonomy