ggKbase home page

S_p1_S3_coassembly_k141_882370

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_882370_1
R_OD1_Kaiserbacteria_53_17, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3..629)
DNA (627bp) protein (209aa)
hth:HTH_1811 cation transporting ATPase, E1-E2 family; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] bin=CD_OP8_4m species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Lead, cadmium, zinc and mercury transporting ATPase
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_53_17_curated
S_p1_S3_coassembly_k141_882370_2
R_OD1_Kaiserbacteria_54_13, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(646..918)
DNA (273bp) protein (91aa)
Putative uncharacterized protein bin=GWC2_TM7_44_17 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_13_curated
S_p1_S3_coassembly_k141_882370_3
R_OD1_Kaiserbacteria_56_24, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

1044..1244
DNA (201bp) protein (67aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_56_24_curated
S_p1_S3_coassembly_k141_882370_4
Capnocytophaga sp. CM59, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1300..2214)
DNA (915bp) protein (305aa)
Putative lipoprotein Tax=Capnocytophaga sp. CM59 RepID=J5XTP7_9FLAO
Putative lipoprotein {ECO:0000313|EMBL:EJU31682.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. CM59.;"
hypothetical protein
S_p1_S3_coassembly_k141_882370_5
R_OD1_Kaiserbacteria_54_20, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2304..3191)
DNA (888bp) protein (296aa)
Putative uncharacterized protein Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z5B2_DESAT
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_20_curated
S_p1_S3_coassembly_k141_882370_6
R_OD1_Kaiserbacteria_54_20, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3232..4326)
DNA (1095bp) protein (365aa)
Uncharacterized protein bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_20_curated
S_p1_S3_coassembly_k141_882370_7
R_OD1_Kaiserbacteria_54_13, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4334..4855)
DNA (522bp) protein (174aa)
RNA polymerase sigma factor bin=GWC2_OP3_44_8 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
RNA polymerase sigma factor SigW
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_13_curated
S_p1_S3_coassembly_k141_882370_8
R_OD1_Kaiserbacteria_54_20, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4937..5749)
DNA (813bp) protein (271aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_20_curated
S_p1_S3_coassembly_k141_882370_9
unknown

Not on your lists

5785..6306
DNA (522bp) protein (174aa)

This feature has no annotations

S_p1_S3_coassembly_k141_882370_10
R_OD1_Kaiserbacteria_55_20, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6161..7267)
DNA (1107bp) protein (369aa)
Sensor protein Tax=uncultured bacterium RepID=K2DP75_9BACT
multi-sensor signal transduction histidine kinase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_55_20_curated
S_p1_S3_coassembly_k141_882370_11
R_OD1_Kaiserbacteria_54_24, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7239..7910)
DNA (672bp) protein (224aa)
two component signal transduction response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR bin=ACD56 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
winged helix family two component transcriptional regulator
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_24_curated
S_p1_S3_coassembly_k141_882370_12
R_OD1_Kaiserbacteria_54_24, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

8138..8830
DNA (693bp) protein (231aa)
transmembrane_regions bin=OD1_GWC2_34_28 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_24_curated
S_p1_S3_coassembly_k141_882370_13
R_OD1_Kaiserbacteria_54_13, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8875..10161)
DNA (1287bp) protein (429aa)
major facilitator transporter bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
putative major facilitator superfamily transporter
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_13_curated
S_p1_S3_coassembly_k141_882370_14
R_OD1_Kaiserbacteria_54_24, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10172..10846)
DNA (675bp) protein (225aa)
ABC transporter, ATP-binding protein; K02003 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
ABC transporter, ATP-binding protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_24_curated
S_p1_S3_coassembly_k141_882370_15
R_OD1_Kaiserbacteria_54_13, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10853..12103)
DNA (1251bp) protein (417aa)
ABC-type transport system permease component LolE Tax=uncultured bacterium CSLC2 RepID=Q8KP05_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_13_curated
S_p1_S3_coassembly_k141_882370_16
R_OD1_Kaiserbacteria_53_31, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12105..13538)
DNA (1434bp) protein (478aa)
hypothetical protein bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RND family efflux transporter MFP subunit
Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_53_31_curated
S_p1_S3_coassembly_k141_882370_trna_1
unknown

Not on your lists

13615..13685
DNA (71bp)
transferRNA Gln
S_p1_S3_coassembly_k141_882370_17
R_RIF_OD1_11_46_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13831..14373
DNA (543bp) protein (181aa)
id=5227308 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_46_13_curated
S_p1_S3_coassembly_k141_882370_18
RHI_OD1_Kaiserbacteria_53_13, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14297..15223)
DNA (927bp) protein (309aa)
hypothetical protein Tax=Microgenomates bacterium SCGC AAA255-J07 RepID=UPI00037B1327
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_OD1_Kaiserbacteria_53_13_curated
S_p1_S3_coassembly_k141_882370_19
unknown

Not on your lists

comp(15225..15593)
DNA (369bp) protein (123aa)

This feature has no annotations

S_p1_S3_coassembly_k141_882370_20
R_OD1_Kaiserbacteria_49_16, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15617..16663)
DNA (1047bp) protein (349aa)
Inosine-5-monophosphate dehydrogenase bin=GWA2_OP3_53_43 species=Chlamydophila felis genus=Chlamydophila taxon_order=Chlamydiales taxon_class=Chlamydiia phylum=Chlamydiae tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
inosine-5'-monophosphate dehydrogenase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_49_16_curated
S_p1_S3_coassembly_k141_882370_21
R_OD1_Kaiserbacteria_53_29, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16699..17217)
DNA (519bp) protein (173aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_53_29_curated
S_p1_S3_coassembly_k141_882370_22
R_OD1_Kaiserbacteria_59_21, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(17214..18875)
DNA (1662bp) protein (554aa)
ctp synthase (EC:6.3.4.2)
CTP synthetase bin=GWA2_OP3_53_43 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_59_21_curated
S_p1_S3_coassembly_k141_882370_23
R_OD1_Kaiserbacteria_59_21, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19073..19996)
DNA (924bp) protein (308aa)
Uncharacterized protein bin=GWA2_OP3_53_43 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
cell division protein FtsX
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_59_21_curated
S_p1_S3_coassembly_k141_882370_24
R_OD1_Kaiserbacteria_59_21, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(20101..20781)
DNA (681bp) protein (227aa)
Cell division ATP-binding protein FtsE bin=GWA2_OP3_53_43 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
cell division ATP-binding protein FtsE
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_59_21_curated
S_p1_S3_coassembly_k141_882370_25
R_OD1_Kaiserbacteria_53_17, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(20848..21726)
DNA (879bp) protein (293aa)
Peptide chain release factor 2 bin=GWA2_OP3_53_43 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
PE-PGRS family protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_53_17_curated
S_p1_S3_coassembly_k141_882370_26
GWA2_OD1_51_10, Parcubacteria, Bacteria

Not on your lists

comp(21752..22831)
DNA (1080bp) protein (360aa)
Riboflavin biosynthesis protein RibD Tax=uncultured bacterium RepID=K2CS02_9BACT
5-amino-6-(5-phosphoribosylamino)uracil reductase {ECO:0000313|EMBL:KKW19420.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_51_10.;"
2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase
S_p1_S3_coassembly_k141_882370_27
R_OD1_Kaiserbacteria_59_21, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22834..24060)
DNA (1227bp) protein (409aa)
GTP cyclohydrolase II (EC:3.5.4.25)
Riboflavin biosynthesis protein RibBA Tax=Clostridium ultunense Esp RepID=M1Z827_9CLOT
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_59_21_curated
S_p1_S3_coassembly_k141_882370_28
R_OD1_Kaiserbacteria_59_21, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(24057..24500)
DNA (444bp) protein (148aa)
6,7-dimethyl-8-ribityllumazine synthase Tax=uncultured bacterium RepID=K2A1L2_9BACT
6,7-dimethyl-8-ribityllumazine synthase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_59_21_curated
S_p1_S3_coassembly_k141_882370_29
R_OD1_Kaiserbacteria_59_21, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(24497..25123)
DNA (627bp) protein (209aa)
ribE; riboflavin synthase alpha chain (EC:2.5.1.9)
Riboflavin synthase, alpha subunit Tax=uncultured bacterium RepID=K2CVF9_9BACT
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_59_21_curated
Displaying items 1-30 of 52 in total

View Taxonomy