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S_p1_S3_coassembly_k141_242272

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_242272_1
unknown

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comp(1..2532)
DNA (2532bp) protein (844aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037379FA
S_p1_S3_coassembly_k141_242272_2
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(2525..3097)
DNA (573bp) protein (191aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037D3CD3
PE-PGRS family protein
Tax=CG_Woesearch_02
S_p1_S3_coassembly_k141_242272_3

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3261..4670
DNA (1410bp) protein (470aa)
hypothetical protein
id=5102950 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62231.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_242272_4
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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comp(4654..5343)
DNA (690bp) protein (230aa)
Glycosyl transferase family 2 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S1E4_FERPA
dolichol-P-glucose synthetase
Tax=RBG_16_Aminicenantes_63_16_curated
S_p1_S3_coassembly_k141_242272_5
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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comp(5340..6233)
DNA (894bp) protein (298aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] bin=RBG_16_Aminicenantes_63_16_plus species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
NAD-dependent epimerase/dehydratase
Tax=RBG_16_Aminicenantes_63_16_curated
S_p1_S3_coassembly_k141_242272_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(6224..7336)
DNA (1113bp) protein (371aa)
DegT/DnrJ/EryC1/StrS aminotransferase Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AX04_FRADG
DegT/DnrJ/EryC1/StrS aminotransferase
Tax=RBG_16_Euryarchaeota_41_19_curated
S_p1_S3_coassembly_k141_242272_7
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(7333..8124)
DNA (792bp) protein (264aa)
Polysaccharide deacetylase Tax=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) RepID=G8UK27_TANFA
polysaccharide deacetylase
Tax=CG_Pacearch_04
S_p1_S3_coassembly_k141_242272_8
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(8415..10157)
DNA (1743bp) protein (581aa)
Uncharacterized protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Carbamoyltransferase
Tax=CG_Pacearch_04
S_p1_S3_coassembly_k141_242272_9
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(10165..10464)
DNA (300bp) protein (100aa)
Tax=CG_Pacearch_04
S_p1_S3_coassembly_k141_242272_10
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10579..11061)
DNA (483bp) protein (161aa)
Bifunctional protein HldE bin=GWC2_Syntrophobacterales_56_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RfaeE domain II
Tax=BJP_IG2069_Syntrophobacterales_46_30
S_p1_S3_coassembly_k141_242272_11
bacterium UASB14, Bacteria

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comp(11046..13070)
DNA (2025bp) protein (675aa)
Glycosyltransferase (EC:2.4.1.-)
Glycosyltransferase Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KVP6_METHD
Glycosyltransferase {ECO:0000313|EMBL:GAK52120.1}; species="Bacteria.;" source="bacterium UASB14.;"
S_p1_S3_coassembly_k141_242272_12
unknown

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comp(13067..13546)
DNA (480bp) protein (160aa)

This feature has no annotations

S_p1_S3_coassembly_k141_242272_13
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13531..14499)
DNA (969bp) protein (323aa)
Uncharacterized protein Tax=Anaerotruncus sp. G3(2012) RepID=R9LIK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS58378.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
radical SAM domain-containing protein
S_p1_S3_coassembly_k141_242272_14
Methanosarcina sp. WWM596, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14481..15749)
DNA (1269bp) protein (423aa)
ABC-type polysaccharide/polyol phosphate transport system, ATPase component Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZT8_METHD
ABC transporter {ECO:0000313|EMBL:AKB19734.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. WWM596.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
S_p1_S3_coassembly_k141_242272_15
CG_Wirth_01, Wirthbacteria, Bacteria

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comp(15746..16507)
DNA (762bp) protein (254aa)
polysaccharide ABC transporter permease; K01992 ABC-2 type transport system permease protein bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Polysaccharide ABC transporter, permease protein
Tax=CG_Wirth_01
S_p1_S3_coassembly_k141_242272_16

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comp(16574..17722)
DNA (1149bp) protein (383aa)
Putative uncharacterized protein Tax=sediment metagenome RepID=D9PJ50_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:EFK96417.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
S_p1_S3_coassembly_k141_242272_17
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

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comp(17746..20418)
DNA (2673bp) protein (891aa)
Conserved uncharacterized protein bin=GWF2_OP3_43_52 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Tax=GWF2_WOR_2_43_52_curated
S_p1_S3_coassembly_k141_242272_18
Methanocaldococcus sp. FS406-22, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(20443..21123)
DNA (681bp) protein (227aa)
Methylase Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S4Z3_METSF
methylase
Methylase {ECO:0000313|EMBL:ADC69907.1}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus sp. (strain FS406-22).;"
S_p1_S3_coassembly_k141_242272_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21089..22510)
DNA (1422bp) protein (474aa)
Radical SAM domain protein bin=GWF2_Nitrospirae_44_13 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Radical SAM domain protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
S_p1_S3_coassembly_k141_242272_20
RHI_OP11_Daviesbacteria_43_11, Daviesbacteria, Microgenomates, Bacteria

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comp(22507..23472)
DNA (966bp) protein (322aa)
Glycosyltransferases, probably involved in cell wall biogenesis bin=GWF2_OP3_38_59 species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_OP11_Daviesbacteria_43_11_curated
S_p1_S3_coassembly_k141_242272_21
RLO_RIF03_38_15, RIF3, Bacteria

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23530..25404
DNA (1875bp) protein (625aa)
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
S_p1_S3_coassembly_k141_242272_22
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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25408..26250
DNA (843bp) protein (281aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:AEG17590.1}; EC=1.1.1.133 {ECO:0000313|EMBL:AEG17590.1};; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1).;"
dTDP-4-dehydrorhamnose reductase Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D555_METSW
S_p1_S3_coassembly_k141_242272_23
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

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26300..26674
DNA (375bp) protein (125aa)
dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WTU1_9NOST
dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme
dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme {ECO:0000313|EMBL:AFZ23603.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
S_p1_S3_coassembly_k141_242272_24

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26664..27359
DNA (696bp) protein (232aa)
type 12 methyltransferase
type 12 methyltransferase bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Type 12 methyltransferase {ECO:0000313|EMBL:AJF60095.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p1_S3_coassembly_k141_242272_25

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comp(27567..28460)
DNA (894bp) protein (298aa)
Marine sediment metagenome DNA, contig: S06H3_S04562 {ECO:0000313|EMBL:GAI27024.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
S_p1_S3_coassembly_k141_242272_26
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

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28585..28815
DNA (231bp) protein (77aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Displaying 26 items

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