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S_p2_S4_coassembly_k141_2817971

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_2817971_1
Lachnoanaerobaculum sp. MSX33, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(69..716)
DNA (648bp) protein (216aa)
TIGR01906 family protein Tax=Lachnospiraceae bacterium ICM7 RepID=J5GQF4_9FIRM
TIGR01906 family protein {ECO:0000313|EMBL:ETO95624.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. MSX33.;"
integral membrane protein TIGR01906
S_p2_S4_coassembly_k141_2817971_2
Drosophila grimshawi, Drosophila, Diptera, Neoptera, Arthropoda, Metazoa

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comp(718..1128)
DNA (411bp) protein (137aa)
Major sperm protein Tax=Ascaris suum RepID=F1L6M0_ASCSU
Bt {ECO:0000313|EMBL:EDV90958.1}; species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila.;" source="Drosophila grimshawi (Fruit fly) (Idiomyia grimshawi).;"
S_p2_S4_coassembly_k141_2817971_3
unknown

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comp(1128..1286)
DNA (159bp) protein (53aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2817971_4
R_Omnitrophica_50_24, Omnitrophica, Bacteria

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comp(1323..1658)
DNA (336bp) protein (112aa)
LBCA THIOREDOXIN Tax=synthetic construct RepID=UPI00038A5F74
thioredoxin
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_50_24_curated
S_p2_S4_coassembly_k141_2817971_5

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comp(1693..2199)
DNA (507bp) protein (169aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI0003716170
Marine sediment metagenome DNA, contig: S03H2_C00951 {ECO:0000313|EMBL:GAH27123.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S_p2_S4_coassembly_k141_2817971_6

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comp(2204..2359)
DNA (156bp) protein (52aa)
Marine sediment metagenome DNA, contig: S01H1_S25145 {ECO:0000313|EMBL:GAG24474.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
S_p2_S4_coassembly_k141_2817971_7
AR11, Woesearchaeaota, DPANN, Archaea

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comp(2769..2981)
DNA (213bp) protein (71aa)
id=5044625 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR11
S_p2_S4_coassembly_k141_2817971_8
AR11, Woesearchaeaota, DPANN, Archaea

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comp(2986..3558)
DNA (573bp) protein (191aa)
transmembrane_regions bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR11
S_p2_S4_coassembly_k141_2817971_9

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3661..4185
DNA (525bp) protein (175aa)
Ribosomal protein L16 {ECO:0000313|EMBL:KHO51722.1}; species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L10e bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L10e
S_p2_S4_coassembly_k141_2817971_10
CG_Pacearch_03, Pacearchaeota, Archaea

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4217..5305
DNA (1089bp) protein (363aa)
hypothetical protein, partial Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003804E87
MscS mechanosensitive ion channel
Tax=CG_Pacearch_03
S_p2_S4_coassembly_k141_2817971_11
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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comp(5324..7855)
DNA (2532bp) protein (844aa)
PGAP1 family protein bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
PGAP1-like protein
Tax=GWA2_WOR_2_47_8_curated
S_p2_S4_coassembly_k141_2817971_12

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8093..9820
DNA (1728bp) protein (576aa)
Kef-type K+ transport system, predicted NAD-binding component Tax=Herbaspirillum sp. YR522 RepID=J3HYD2_9BURK
Monovalent cation:H+ antiporter-2, CPA2 family {ECO:0000313|EMBL:KHO51145.1}; species="Archaea.;" source="archaeon GW2011_AR11.;"
Kef-type K+ transport system membrane protein
S_p2_S4_coassembly_k141_2817971_13
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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9867..10427
DNA (561bp) protein (187aa)
SSU ribosomal protein S6E bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ribosomal protein S6e
Tax=GWA2_WOR_2_47_8_curated
S_p2_S4_coassembly_k141_2817971_14

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10884..12143
DNA (1260bp) protein (420aa)
Translation initiation factor 2 subunit 3 {ECO:0000313|EMBL:KHO51155.1}; species="Archaea.;" source="archaeon GW2011_AR11.;"
Translation initiation factor 2 subunit gamma bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
translation initiation factor IF-2 subunit gamma
S_p2_S4_coassembly_k141_2817971_15
unknown

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12337..12639
DNA (303bp) protein (101aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2817971_16
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(12657..13184)
DNA (528bp) protein (176aa)
adenine phosphoribosyltransferase (EC:2.4.2.7)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036F706F
Tax=GWF2_Bacteroidetes_35_48_curated
S_p2_S4_coassembly_k141_2817971_17
RBG_13_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

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13265..14341
DNA (1077bp) protein (359aa)
translation initiation factor, aIF-2BI family (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] bin=RAAC11 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RAAC11 organism_group=Unknown_CP
S-methyl-5-thioribose-1-phosphate isomerase
Tax=RBG_13_Chloroflexi_56_8_curated
S_p2_S4_coassembly_k141_2817971_18

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comp(14355..15146)
DNA (792bp) protein (264aa)
Uncharacterized protein Tax=Brevibacillus laterosporus PE36 RepID=U4WIJ0_BRELA
Uncharacterized protein {ECO:0000313|EMBL:KKN16998.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative nucleotidyltransferase
S_p2_S4_coassembly_k141_2817971_19
R_Nitrospirae_40_19, Nitrospirae, Bacteria

Not on your lists

15221..16018
DNA (798bp) protein (266aa)
DhnA-type fructose-1,6-bisphosphate aldolase (EC:4.2.1.-)
Fructose-bisphosphate aldolase bin=GWB2_Nitrospirae_rel_47_37 species=Thermoplasmatales archaeon SCGC AB-539-N05 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
S_p2_S4_coassembly_k141_2817971_20
unknown

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16027..16542
DNA (516bp) protein (172aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2817971_21
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

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16581..17606
DNA (1026bp) protein (342aa)
Alcohol dehydrogenase bin=GWF2_Nitrospirae_44_13 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
theronine dehydrogenase-like Zn-dependent dehydrogenase
Tax=GWF2_Nitrospirae_44_13_curated
S_p2_S4_coassembly_k141_2817971_22
R_WOR_2_63_39, WOR-2, Bacteria

Not on your lists

17657..18493
DNA (837bp) protein (279aa)
Aldo/keto reductase Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFK9_9BACT
aldo/keto reductase
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
S_p2_S4_coassembly_k141_2817971_23
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(18527..19321)
DNA (795bp) protein (265aa)
PREDICTED: S-methyl-5''''-thioadenosine phosphorylase isoform X1 Tax=Mustela putorius furo RepID=UPI0003445755
5'-deoxy-5'-methylthioadenosine phosphorylase
Tax=CG_Woesearch_01
S_p2_S4_coassembly_k141_2817971_24

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comp(19331..19969)
DNA (639bp) protein (213aa)
ZPR1-like zinc finger protein; K06874 zinc finger protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Zinc finger protein {ECO:0000313|EMBL:KHO45190.1}; species="Archaea.;" source="archaeon GW2011_AR3.;"
ZPR1-like protein zinc finger protein
S_p2_S4_coassembly_k141_2817971_25
unknown

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20068..20250
DNA (183bp) protein (61aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2817971_26
Desulfotomaculum acetoxidans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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20410..21204
DNA (795bp) protein (265aa)
PAS modulated sigma54 specific transcriptional regulator, Fis family Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W252_DESAS
PAS modulated Fis family sigma-54-specific transcriptional regulator
PAS modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ACV61716.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM; B-1644).;"
S_p2_S4_coassembly_k141_2817971_27
AR11, Woesearchaeaota, DPANN, Archaea

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21310..22146
DNA (837bp) protein (279aa)
Tax=AR11
S_p2_S4_coassembly_k141_2817971_28
AR11, Woesearchaeaota, DPANN, Archaea

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comp(22139..22672)
DNA (534bp) protein (178aa)
Putative uncharacterized protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LHT2_SYNFM
hypothetical protein
Tax=AR11
S_p2_S4_coassembly_k141_2817971_29
unknown

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22774..23400
DNA (627bp) protein (209aa)

This feature has no annotations

S_p2_S4_coassembly_k141_2817971_30
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(23397..23903)
DNA (507bp) protein (169aa)
Tax=AR11
Displaying items 1-30 of 31 in total

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