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NECEvent2014_2_3_scaffold_225_22

Organism: NECEvent2014_2_3_Actinomyces_HPA0247_66_505

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 15 / 38 MC: 1
Location: comp(19052..22636)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1203556 species="Bacteria; A similarity UNIPROT
DB: UniProtKB
  • Identity: 99.3
  • Coverage: 999.99
  • Bit_score: 2322
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Actinomyces sp. HPA0247 RepID=S2ZVZ3_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 999.99
  • Bit_score: 2323
  • Evalue 0.0
  • rbh
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 63.6
  • Coverage: 999.99
  • Bit_score: 1490
  • Evalue 0.0

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Taxonomy

Actinomyces sp. HPA0247 → Actinomyces → Actinomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3585
GTGCTACTCACCGGACTCCTCCCGGACATCTCCACTGATCCCGCGATCGAGACGGCCACCGACTCCATCGAGGCGGGCCGCTCGGGCACAATCGTTGCTCCCGTTGGCATCAGGCCGCCCCTCCTCGCGGCCGTCGCCTCGCGCGCGGCCACGCCGCTCGTCGTCCTCACGGCCACCGGGCGTGACGCTGAGTCGCTGACCAACGCCCTGGCCTCGTGGATCCCGGGCGTCGCCATGCTGCCCGCGTGGGAAACCCTGCCCCACGAGCGTCTGTCGCCCCAGGTCGACACGATGGCGCGCCGCATCGCGGTCCTGCGCCGCCTCGTCCACCCCATCGAAGGGGATGAGAGCGCGGGCCCGCTGTCCGTCCTCGTCGTGCCGATCCGCGCCTTCCTCCAGCCGATCATCTCAGGCCTGGCGGACCTCGAACCCGTGCGCGTGCGCACCGGCGACATCCTCGACCTCACCGACGTGACGAACCGACTGGCCGAGCTCGGCTACGAGCGCGTCGACATGGTCGAAGGCCGCGGCCAGATGAGCGTGCGCGGCGGCATTCTCGACGTCTTCCCGCCTCAGGAGCCTCACCCGCTGCGCGTCGAACTGTGGGGCGACGAAGTCGACGACATCCGCGCCTTCTCCGTCTCCGACCAGCGAACCCTCGGCGAGGCCACCGACGGTCTGTGGGCCGTGCCCTGCCGCGAGCTCCTCCTGACCCAAGCCGTGCGCGCCCGCGCGCGCGAGGCCGCCGACCGCCTGCCCGGCGCCGCTGAGATGCTGACCCTCGCCGCCGAGGGAATCGCAGCCCCCGGCATCGAATCCCTCGCCCCGATTCTGGTCAGCGGCATGGAATCCCTCCTCGATCTGCTGCCCGCGGGATCGCCGATCCTCGCCTCCGACCCCGAACGCATCCGTGCCCGCGCCGCCGACCTCGTGGCCACGACCGAGGAGTTCCTCGCCGCCGCGTGGAGCGCTGCCGCCGGGGGAGCTGATACCCCGCTCGAGGCCTCCAAGGCCTCGTTCCTGGACCTGTCCGACCTGTGGGGGAGCGGGACGCGCCCCTGGTGGGAGCTCACCGACCTGCCGCCCGCCGACCTCGCCTCCGCGATCGACGAGGCCGAGGCCGCCTCGCCCTCTGCGGACGGCCCGGCGCCCGTCGTCGTCTCGCCCACCCTCATGCGTGTGGGTGCCCGCGACGTGCACCCCTACCGCGGGGACTTCGCCCGCGCCGCCGCCGACCTCACGGATCTGGCCCGAGACGGCTGGCGCATCGTCGTCACCACCGAAGGCCCAGGCCCGGGACGCCGCATCCGCTCCATCCTCACCGACGCCTCGTGCCCGGCCGCGCTCGCGGACAACGTGGAGGCGAGCCCCGACCCCGGCCTCGTGACGATTACGACCGCGCAGGCCGGCGTCGGATTCGTCGCACCCCATCTCAAGATCGCGATCCTCACCGAAGGTGACCTCACCGGGCGCGCGGGCGCCTCCACGCGCGACATGCGACGCATGCCCTCGCGCAGGCGCAAGGGCGTGGACCCGCTCACTCTGCATCCAGGGGACTACATAGTCCATGACCAGCACGGCATCGGACGCTTCATCGAGCTGGTCTCCCGCACGATTGGGCGAGGAGACGCCGCATCCACGCGCGACTACCTCGTCATCGAATACGCGCCCTCCAAGCGCGGCCAGCCCGCCGACCGCCTCTTCGTCCCCACCGACGCGCTCGACCAGATCTCGAAGTACACCGGATCCGACGAGCCGTCCCTGACCAAGATGGGCGGCGCCGACTGGGCGAAGACCAAGGCGCGCGCGAAGAAGGCCGTCAACGAGGTCGCCAAGGAACTCATCCGCCTGTACGCCGTGCGCCAGCAGACCAAGGGGCACGCCTTCGGCCCCGACACCCCCTGGCAGCGCGAACTCGAAGACGCCTTCCCCTACGTCGAGACCCCCGACCAGCTCGTCACCATCGACGAGGTCAAGGCCGACATGGAAAAGCCCGTGCCCATGGACCGCCTGCTCACCGGCGACGTCGGCTACGGCAAGACCGAAATCGCCGTGCGCGCCGCGTTCAAGGCCATCCAGGACGGCTACCAGGTCGCGGTCCTCGTACCCACGACCCTGCTGGTCACCCAGCACGCCGAAACCTTCGCCGAGCGCTACGCCGGGTTCCCCGTACACATCGGCACCCTGTCGCGCTTCTCGACGCCGAAGGAAACCGAGGAGGTCAAGGCGGGCTTGGCCTCGGGCGAGGTCGACCTGGTGATCGGCACCCACTCGCTGCTGACCGGCACCGTCTCCTTCAAGAAGCTCGGCCTGGTCATCATCGACGAGGAGCAGCGCTTCGGCGTCGAACACAAGGAGACCCTCAAGGCCCTGCGCACCGACGTGGACGTCCTGTCCATGTCCGCCACCCCCATCCCGCGTACCCTCGAGATGGCGATCTCCGGCATCCGCGAGATGTCGATTCTCCAGACCCCGCCCGAGGAGCGACAGCCGGTCCTGACCTTCGTCGGCGCCTACACGGACGCCCAGGTCAGCGCCGCGATCCGCCGCGAACTCCTGCGCGACGGACAGGTCTTCTACGTCCATAACCGCGTTGACTCGATCTCCTCGGTCGCCGCTCATATCTCTGAGCTGGTCCCCGAGGCGCGCGTGCGCACCGCTCACGGCAAGATGAACGAGCATCAGCTTGAGGCCGTCATCCAGGACTTCTGGAACCACGAGTTCGACGTCCTCGTGTGCACGACCATCGTTGAAACCGGCCTGGACATCTCCAACGCGAACACGCTCATCGTGGACCGCGCCGACACCTTCGGCCTGTCCCAGCTCCACCAGCTGCGCGGGCGCGTCGGACGAGGCCGCGAACGCGCCTACGCGTACTTCTTCTACCCGGGCGACAAGGCGTTGACCGAGACCGCGCACGAGCGCCTCAAGACGATCGCCGCGAACACCGAGCTGGGTGCGGGCCTCGCGGTTGCCCAGCGCGACCTTGAGATCCGAGGCGCCGGCAACCTCCTGGGAGGGGCGCAGTCCGGCCACGTCGAAGGTGTCGGATTCGACCTGTACGTGCGTATGGTCTCCGACGCGGTCGCCGCCTACCGAGGCGACGCTCCGGCTGAGAAGACGGACGTGCGCATGGACCTGCAGGTCGACGCGCACATTCCCGACGGCTACGTGCGCGGCGAGCGCCTGCGCCTCGAGGTCTACGCGAAGATTGCGGCCATCTCCACGCCCGAACAGGAAGCGGACGTGCGAGAGGAACTTGTCGACCGCTACGGCCCCATCCCGCCCCAGGTCGACCTGCTCTTTGCCGTCGCACGCCTGCGCGAGATCGTGCGCCGCGCAGGCATCACCGAGATCGTCACGCAGGGCAAGTACCTGCGCGTCTCGCCCGTCGAACTACGCGATTCCCAGGTGATGCGCCTCAAGCGCCTGCACCCCGGAACGGTCATCAAAGCCGCCGTTCGTCAGGTTCTCGTCCCGCTACCGCTCACCTCGCGCGTCGGTGGATCACCGCTTACCGACGGCCCGCTCCTGGAGTGGGTGGAGACTCTGGTGACCAAGATTCTCGTGCCTTTTGGCGAGTAG
PROTEIN sequence
Length: 1195
VLLTGLLPDISTDPAIETATDSIEAGRSGTIVAPVGIRPPLLAAVASRAATPLVVLTATGRDAESLTNALASWIPGVAMLPAWETLPHERLSPQVDTMARRIAVLRRLVHPIEGDESAGPLSVLVVPIRAFLQPIISGLADLEPVRVRTGDILDLTDVTNRLAELGYERVDMVEGRGQMSVRGGILDVFPPQEPHPLRVELWGDEVDDIRAFSVSDQRTLGEATDGLWAVPCRELLLTQAVRARAREAADRLPGAAEMLTLAAEGIAAPGIESLAPILVSGMESLLDLLPAGSPILASDPERIRARAADLVATTEEFLAAAWSAAAGGADTPLEASKASFLDLSDLWGSGTRPWWELTDLPPADLASAIDEAEAASPSADGPAPVVVSPTLMRVGARDVHPYRGDFARAAADLTDLARDGWRIVVTTEGPGPGRRIRSILTDASCPAALADNVEASPDPGLVTITTAQAGVGFVAPHLKIAILTEGDLTGRAGASTRDMRRMPSRRRKGVDPLTLHPGDYIVHDQHGIGRFIELVSRTIGRGDAASTRDYLVIEYAPSKRGQPADRLFVPTDALDQISKYTGSDEPSLTKMGGADWAKTKARAKKAVNEVAKELIRLYAVRQQTKGHAFGPDTPWQRELEDAFPYVETPDQLVTIDEVKADMEKPVPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQVAVLVPTTLLVTQHAETFAERYAGFPVHIGTLSRFSTPKETEEVKAGLASGEVDLVIGTHSLLTGTVSFKKLGLVIIDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAISGIREMSILQTPPEERQPVLTFVGAYTDAQVSAAIRRELLRDGQVFYVHNRVDSISSVAAHISELVPEARVRTAHGKMNEHQLEAVIQDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADTFGLSQLHQLRGRVGRGRERAYAYFFYPGDKALTETAHERLKTIAANTELGAGLAVAQRDLEIRGAGNLLGGAQSGHVEGVGFDLYVRMVSDAVAAYRGDAPAEKTDVRMDLQVDAHIPDGYVRGERLRLEVYAKIAAISTPEQEADVREELVDRYGPIPPQVDLLFAVARLREIVRRAGITEIVTQGKYLRVSPVELRDSQVMRLKRLHPGTVIKAAVRQVLVPLPLTSRVGGSPLTDGPLLEWVETLVTKILVPFGE*