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NECEvent2014_2_3_scaffold_47

Alias: 172_003_scaffold_47

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_47_1
unknown

Not on your lists

3..146
DNA (144bp) protein (48aa)

This feature has no annotations

NECEvent2014_2_3_scaffold_47_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(149..343)
DNA (195bp) protein (65aa)
ABC-type transport system, aminoacid-family ATP-binding protein (Modular protein) {ECO:0000313|EMBL:CDT29590.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDT29590.1};; TaxID=1496 species="Bacteria; Firmicutes; Cl
NECEvent2014_2_3_scaffold_47_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(398..1120)
DNA (723bp) protein (241aa)
amino acid family ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, aminoacid-family ATP-binding protein {ECO:0000313|EMBL:CAJ67586.1}; EC=3.6.3.- {ECO:0000313|EMBL:CAJ67586.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostr
ABC transporter family protein n=6 Tax=Clostridium difficile RepID=T3I641_CLODC rbh
NECEvent2014_2_3_scaffold_47_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1179..1856)
DNA (678bp) protein (226aa)
Amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein n=220 Tax=Clostridium difficile RepID=C9XLX9_CLODC rbh
amino acid ABC transporter permease
ABC-type transport system, aminoacid-family permease {ECO:0000313|EMBL:CCL00656.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" s
NECEvent2014_2_3_scaffold_47_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1884..2699)
DNA (816bp) protein (272aa)
Amino acid ABC transporter, substrate-binding protein n=203 Tax=Clostridium difficile RepID=C9XLX8_CLODC rbh
amino acid ABC transporter substrate-binding protein rbh
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EHJ31217.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
NECEvent2014_2_3_scaffold_47_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2983..3126)
DNA (144bp) protein (48aa)
Uncharacterized protein n=92 Tax=Clostridium difficile RepID=G6BV11_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE68706.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_47_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3518..5581)
DNA (2064bp) protein (688aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium
UvrD/REP helicase N-terminal domain protein n=3 Tax=Clostridium difficile RepID=T3IB46_CLODC rbh
putative DNA helicase, UvrD/REP type
NECEvent2014_2_3_scaffold_47_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5661..8696)
DNA (3036bp) protein (1012aa)
Diguanylate cyclase domain protein n=143 Tax=Clostridium difficile RepID=T3I9Z4_CLODC rbh
Putative diguanylate kinase signaling protein {ECO:0000313|EMBL:CAJ67582.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="P
putative diguanylate kinase signaling protein
NECEvent2014_2_3_scaffold_47_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8743..10203)
DNA (1461bp) protein (487aa)
Bacterial extracellular solute-binding family protein n=8 Tax=Clostridium difficile RepID=T3I514_CLODC rbh
putative lipoprotein
Lipoprotein {ECO:0000313|EMBL:CKH60361.1}; Putative lipoprotein {ECO:0000313|EMBL:CEJ97294.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_3_scaffold_47_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10295..10669)
DNA (375bp) protein (125aa)
Putative membrane protein n=6 Tax=Clostridium difficile RepID=T3I658_CLODC
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ67580.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_47_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10845..11585)
DNA (741bp) protein (247aa)
Membrane MotB of proton-channel complex MotA/MotB family protein n=41 Tax=Clostridium difficile RepID=T3I7X0_CLODC rbh
OmpA/MotB proton channel
Putative OmpA/MotB proton channel {ECO:0000313|EMBL:CAJ67579.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
NECEvent2014_2_3_scaffold_47_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11606..12394)
DNA (789bp) protein (263aa)
MotA/TolQ/ExbB proton channel family protein n=6 Tax=Clostridium difficile RepID=T3IB41_CLODC rbh
putative MotA/TolQ/ExbB proton channel
Chemotaxis protein {ECO:0000313|EMBL:CKH60480.1}; Putative MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:CEJ97291.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrept
NECEvent2014_2_3_scaffold_47_trna_1
unknown

Not on your lists

comp(12485..12572)
DNA (88bp)
transferRNA
NECEvent2014_2_3_scaffold_47_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12831..13595
DNA (765bp) protein (255aa)
DeoR-family transcriptional regulator n=177 Tax=Clostridium difficile RepID=C9XLX1_CLODC rbh
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:CCL32839.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_47_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13876..14991)
DNA (1116bp) protein (372aa)
Ethanolamine utilization , EutH family protein n=6 Tax=Clostridium difficile RepID=T3I509_CLODC rbh
putative ethanolamine transporter
Putative ethanolamine transporter {ECO:0000313|EMBL:CAJ67576.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
NECEvent2014_2_3_scaffold_47_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15032..16558)
DNA (1527bp) protein (509aa)
glpK1; Glycerol kinase (GK) (EC:2.7.1.30)
Glycerol kinase {ECO:0000313|EMBL:CDS84568.1}; EC=2.7.1.30 {ECO:0000313|EMBL:CDS84568.1};; Glycerol kinase (GK) {ECO:0000313|EMBL:CDS84118.1}; EC=2.7.1.30 {ECO:0000313|EMBL:CDS84118.1};; TaxID=1496 sp
Glycerol kinase n=123 Tax=Clostridium difficile RepID=T3I652_CLODC rbh
NECEvent2014_2_3_scaffold_47_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16851..17948
DNA (1098bp) protein (366aa)
Aminotransferase class-V family protein n=37 Tax=Clostridium difficile RepID=T3I519_CLODC rbh
putative pyridoxal phosphate-dependentaminotransferase
Aminotransferase class-V family protein {ECO:0000313|EMBL:EQE68717.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
NECEvent2014_2_3_scaffold_47_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18364..18876)
DNA (513bp) protein (171aa)
Putative exported protein n=11 Tax=Clostridium difficile RepID=T3I665_CLODC rbh
putative exported protein
Putative exported protein {ECO:0000313|EMBL:CAJ67573.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_47_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19429..20310
DNA (882bp) protein (294aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T2U514_CLODI rbh
putative exported protein
Putative exported protein {ECO:0000313|EMBL:CAJ67572.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_47_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20623..21402)
DNA (780bp) protein (260aa)
hisK; histidinol-phosphatase (EC:3.1.3.15)
Histidinol-phosphatase (HolPase) {ECO:0000313|EMBL:CCL32833.1}; EC=3.1.3.15 {ECO:0000313|EMBL:CCL32833.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcacea
Histidinol-phosphatase n=80 Tax=Clostridium difficile RepID=T3I5C8_CLODC rbh
NECEvent2014_2_3_scaffold_47_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21948..22298)
DNA (351bp) protein (117aa)
Uncharacterized protein n=200 Tax=Clostridium difficile RepID=C9XLW3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ31232.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_47_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22314..22730)
DNA (417bp) protein (139aa)
Uncharacterized protein n=216 Tax=Clostridium difficile RepID=C9XLW2_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG78015.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_47_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22749..22940)
DNA (192bp) protein (64aa)
Uncharacterized protein n=219 Tax=Clostridium difficile RepID=C9YJB2_CLODR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL00638.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_47_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23090..23905)
DNA (816bp) protein (272aa)
Octanoyltransferase LipM {ECO:0000256|HAMAP-Rule:MF_02118}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_02118};; Octanoyl-[acyl-carrier-protein]:[GcvH] N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_021
Octanoyltransferase LipM n=176 Tax=Clostridium difficile RepID=LIPM_CLOD6 rbh
putative biotin/lipoate-protein ligase
NECEvent2014_2_3_scaffold_47_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23952..24890)
DNA (939bp) protein (313aa)
Putative radical SAM superfamily protein {ECO:0000313|EMBL:CEJ97279.1}; Radical SAM protein {ECO:0000313|EMBL:CKH60944.1}; EC=2.8.1.6 {ECO:0000313|EMBL:CKH60944.1};; TaxID=1496 species="Bacteria; Firm
Radical SAM superfamily protein n=6 Tax=Clostridium difficile RepID=T3I5C1_CLODC rbh
putative radical SAM superfamily protein
NECEvent2014_2_3_scaffold_47_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24887..25759)
DNA (873bp) protein (291aa)
Biotin and Thiamin Synthesis associated domain protein n=141 Tax=Clostridium difficile RepID=T3I6I1_CLODC rbh
putative radical SAM superfamily protein
Biotin and Thiamin Synthesis associated domain protein {ECO:0000313|EMBL:EQE68710.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;"
NECEvent2014_2_3_scaffold_47_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25784..27712)
DNA (1929bp) protein (643aa)
Iron-sulfur protein {ECO:0000313|EMBL:CKH61037.1}; EC=1.17.1.- {ECO:0000313|EMBL:CKH61037.1};; Putative iron-sulfur protein {ECO:0000313|EMBL:CEJ97277.1}; TaxID=1496 species="Bacteria; Firmicutes; Clo
2Fe-2S iron-sulfur cluster binding domain protein n=114 Tax=Clostridium difficile RepID=T3I876_CLODC rbh
putative iron-sulfur protein
NECEvent2014_2_3_scaffold_47_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27824..28201)
DNA (378bp) protein (126aa)
Glycine cleavage system H protein n=208 Tax=Clostridium difficile RepID=GCSH_CLOD6
glycine cleavage system protein H
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
NECEvent2014_2_3_scaffold_47_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28288..30414)
DNA (2127bp) protein (709aa)
CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit n=185 Tax=Clostridium difficile RepID=C9XLV5_CLODC rbh
bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta rbh
Putative carbon monoxide dehydrogenase/acetyl-CoA synthase complex, beta subunit {ECO:0000313|EMBL:CBE02606.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococca
NECEvent2014_2_3_scaffold_47_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30471..31277)
DNA (807bp) protein (269aa)
5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase n=219 Tax=Clostridium difficile RepID=C9XLV4_CLODC rbh
carbon monoxide dehydrogenase/acetyl-CoA synthase complex, methyltransferase subunit
5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase {ECO:0000313|EMBL:EQG77493.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; P
Displaying items 1-30 of 59 in total

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