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NECEvent2014_2_3_scaffold_78

Alias: 172_003_scaffold_78

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_78_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..640
DNA (639bp) protein (213aa)
N-acetylmuramoyl-L-alanine amidase family protein n=1 Tax=Clostridium difficile DA00126 RepID=T3M0V4_CLODI
N-acetylmuramoyl-L-alanine amidase
N-acetylmuramoyl-L-alanine amidase family protein {ECO:0000313|EMBL:EQI87659.1}; Flags: Fragment;; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoc
NECEvent2014_2_3_scaffold_78_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

882..2795
DNA (1914bp) protein (638aa)
Uncharacterized protein n=29 Tax=Clostridium difficile RepID=Q18AN7_CLOD6 rbh
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG91832.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ97595.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
NECEvent2014_2_3_scaffold_78_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2788..5007
DNA (2220bp) protein (740aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium
UvrD/REP helicase N-terminal domain protein n=90 Tax=Clostridium difficile RepID=T3I268_CLODC rbh
putative helicase, superfamily 1, UvrD-family
NECEvent2014_2_3_scaffold_78_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5116..5946
DNA (831bp) protein (277aa)
PD-(D/E)XK nuclease superfamily protein n=78 Tax=Clostridium difficile RepID=C9XND4_CLODC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL29116.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_78_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5936..9403
DNA (3468bp) protein (1156aa)
addB; ATP-dependent nuclease subunit B (ATP-dependenthelicase addB), Superfamily 1 UvrD-family (EC:3.6.1.-)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000255|HAMAP-Rule:MF_01452}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01452};; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_01452};; ATP-dependent helic
ATP-dependent helicase/deoxyribonuclease subunit B n=26 Tax=Clostridium difficile RepID=ADDB_CLOD6 rbh
NECEvent2014_2_3_scaffold_78_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9403..13230
DNA (3828bp) protein (1276aa)
addA; ATP-dependent nuclease subunit A (ATP-dependenthelicase addA) (EC:3.6.1.-)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {E
ATP-dependent helicase/nuclease subunit A n=14 Tax=Clostridium difficile RepID=ADDA_CLOD6 rbh
NECEvent2014_2_3_scaffold_78_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13276..14487
DNA (1212bp) protein (404aa)
Exonuclease SbcCD, D subunit n=189 Tax=Clostridium difficile RepID=T3HX98_CLODC rbh
sbcD; Nuclease SbcCD subunit D
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:EQI87638.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_78_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14474..18001
DNA (3528bp) protein (1176aa)
AAA domain protein n=39 Tax=Clostridium difficile RepID=T3I273_CLODC rbh
sbcC; Nuclease SbcCD subunit C
Nuclease SbcCD subunit C {ECO:0000313|EMBL:CAJ67884.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_78_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18132..19385
DNA (1254bp) protein (418aa)
Transporter associated domain protein n=28 Tax=Clostridium difficile RepID=T4I064_CLODI rbh
modulator of ions transport
Putative membrane protein {ECO:0000313|EMBL:CAJ67885.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_78_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19534..20586
DNA (1053bp) protein (351aa)
Sporulation integral membrane protein YtvI n=111 Tax=Clostridium difficile RepID=G6BVP1_CLODI rbh
hypothetical protein
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:EQG77603.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pep
NECEvent2014_2_3_scaffold_78_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20676..21902
DNA (1227bp) protein (409aa)
pepT; peptidase T (EC:3.4.11.4)
Peptidase T {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064331}; EC=3.4.11.4 {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064282};; Aminotripeptidase {ECO:0000256|HAMAP-Rule:M
Peptidase T n=98 Tax=Clostridium difficile RepID=T3I050_CLODC rbh
NECEvent2014_2_3_scaffold_78_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22109..23161
DNA (1053bp) protein (351aa)
Cell wall binding repeat 2 family protein n=74 Tax=Clostridium difficile RepID=T3HYG7_CLODC rbh
cell surface protein
Putative cell wall-binding protein cwp18 {ECO:0000313|EMBL:CAJ67888.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
NECEvent2014_2_3_scaffold_78_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23533..24102)
DNA (570bp) protein (190aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
Phosphodiesterase, MJ0936 family protein n=199 Tax=Clostridium difficile RepID=C9XNE3_CLODC rbh
phosphodiesterase
NECEvent2014_2_3_scaffold_78_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24127..24927)
DNA (801bp) protein (267aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-
Probable inorganic polyphosphate/ATP-NAD kinase n=218 Tax=Clostridium difficile RepID=C9XNE4_CLODC rbh
inorganic polyphosphate/ATP-NAD kinase
NECEvent2014_2_3_scaffold_78_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25062..25922
DNA (861bp) protein (287aa)
ABC transporter family protein n=122 Tax=Clostridium difficile RepID=T3I231_CLODC rbh
ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:EQG77285.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
NECEvent2014_2_3_scaffold_78_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25922..26608
DNA (687bp) protein (229aa)
ABC-2 transporter family protein n=196 Tax=Clostridium difficile RepID=C9XNE6_CLODC rbh
ABC transporter permease
ABC-2 transporter family protein {ECO:0000313|EMBL:EQE67762.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
NECEvent2014_2_3_scaffold_78_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26660..27202
DNA (543bp) protein (181aa)
Uncharacterized protein n=174 Tax=Clostridium difficile RepID=T3I2Z6_CLODC rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE67741.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_78_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27281..27748
DNA (468bp) protein (156aa)
YbaK / prolyl-tRNA synthetases associated domain protein n=186 Tax=Clostridium difficile RepID=T3HZT5_CLODC rbh
putative oligonucleotide binding proteinpossibly involved in recognition/discrimination or editingof prolyl-tRNA
Putative oligonucleotide binding protein possibly involved in recognition/discrimination or editing of prolyl-tRNA {ECO:0000313|EMBL:CAJ67894.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia
NECEvent2014_2_3_scaffold_78_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28457..29593
DNA (1137bp) protein (379aa)
bcd2; Butyryl-CoA dehydrogenase (EC:1.3.99.-)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:CAJ67895.1}; EC=1.3.99.- {ECO:0000313|EMBL:CAJ67895.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pepto
Butyryl-CoA dehydrogenase n=185 Tax=Clostridium difficile RepID=Q18AQ1_CLOD6 rbh
NECEvent2014_2_3_scaffold_78_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29652..30434
DNA (783bp) protein (261aa)
Electron transfer flavoprotein beta-subunit n=205 Tax=Clostridium difficile RepID=C9XNF0_CLODC rbh
electron transfer flavoprotein subunit beta
Electron transfer flavoproteins subunit beta {ECO:0000313|EMBL:CCK89850.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="P
NECEvent2014_2_3_scaffold_78_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30453..31463
DNA (1011bp) protein (337aa)
Electron transfer flavoprotein alpha-subunit n=207 Tax=Clostridium difficile RepID=C9XNF1_CLODC rbh
etfA2; electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:CCL29133.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="P
NECEvent2014_2_3_scaffold_78_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31482..32279
DNA (798bp) protein (266aa)
crt2; 3-hydroxybutyryl-CoA dehydratase (Crotonase) (EC:4.2.1.55)
3-hydroxybutyryl-CoA dehydratase (Crotonase) {ECO:0000313|EMBL:CAJ67898.1}; EC=4.2.1.55 {ECO:0000313|EMBL:CAJ67898.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostre
3-hydroxybutyryl-CoA dehydratase (Crotonase) n=25 Tax=Clostridium difficile RepID=Q18AQ8_CLOD6 rbh
NECEvent2014_2_3_scaffold_78_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32377..33222
DNA (846bp) protein (282aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:CCL29135.1}; EC=1.1.1.157 {ECO:0000313|EMBL:CCL29135.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococca
3-hydroxybutyryl-CoA dehydrogenase n=208 Tax=Clostridium difficile RepID=C9XNF3_CLODC rbh
3-hydroxybutyryl-CoA dehydrogenase
NECEvent2014_2_3_scaffold_78_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33294..34484
DNA (1191bp) protein (397aa)
Acetyl-CoA C-acetyltransferase n=8 Tax=Clostridium difficile RepID=G6B8C9_CLODI rbh
thlA1; acetyl-CoA acetyltransferase
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CBE03061.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium d
NECEvent2014_2_3_scaffold_78_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34680..35582
DNA (903bp) protein (301aa)
pseudouridylate synthase (EC:4.2.1.70)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoc
Pseudouridine synthase n=40 Tax=Clostridium difficile RepID=T3I2N4_CLODC rbh
NECEvent2014_2_3_scaffold_78_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35596..36600
DNA (1005bp) protein (335aa)
Uncharacterized protein n=180 Tax=Clostridium difficile RepID=Q18AR5_CLOD6 rbh
hypothetical protein
Nucleoid-associated protein {ECO:0000313|EMBL:CKG92544.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS86153.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococca
NECEvent2014_2_3_scaffold_78_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36744..36971)
DNA (228bp) protein (76aa)
Acyl carrier protein n=222 Tax=Clostridium difficile RepID=C9XNF7_CLODC
acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridia
NECEvent2014_2_3_scaffold_78_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37143..37568
DNA (426bp) protein (142aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=Q18AR3_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL29140.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_78_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37595..37822
DNA (228bp) protein (76aa)
Uncharacterized protein n=44 Tax=Clostridium difficile RepID=C9XNF9_CLODC
Uncharacterized protein {ECO:0000313|EMBL:EFH06929.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
hypothetical protein
NECEvent2014_2_3_scaffold_78_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38004..38183
DNA (180bp) protein (60aa)
Uncharacterized protein n=197 Tax=Clostridium difficile RepID=C9YK20_CLODR
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQG77593.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
Displaying items 1-30 of 47 in total

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