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NECEvent2014_2_3_scaffold_93

Alias: 172_003_scaffold_93

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_93_1

Not on your lists

comp(1..300)
DNA (300bp) protein (100aa)
Peroxiredoxin n=1 Tax=Staphylococcus epidermidis VCU041 RepID=H3UCH3_STAEP
OsmC/Ohr family protein
Osmotic stress regulator {ECO:0000313|EMBL:ETJ33444.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_2_3_scaffold_93_2

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378..740
DNA (363bp) protein (121aa)
Glycerophosphodiester phosphodiesterase family protein n=1 Tax=Staphylococcus epidermidis IS-250 RepID=I0TJJ3_STAEP
glycerophosphoryl diester phosphodiesterase
Putative glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:ETJ19439.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_2_3_scaffold_93_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(900..1121)
DNA (222bp) protein (74aa)
Putative membrane protein n=3 Tax=Clostridium difficile RepID=T2VWG0_CLODI
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EFH08108.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_93_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1150..1626)
DNA (477bp) protein (159aa)
Transposase, YhgA-like family protein n=179 Tax=Clostridium difficile RepID=C9XMT1_CLODC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30801.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_93_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1845..2606
DNA (762bp) protein (254aa)
MerR regulatory family protein n=140 Tax=Clostridium difficile RepID=C9XMT2_CLODC rbh
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CCL30802.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_93_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2866..4794)
DNA (1929bp) protein (643aa)
PRD domain protein n=25 Tax=Clostridium difficile RepID=T2TZ10_CLODI rbh
transcription antiterminator
Transcription antiterminator {ECO:0000313|EMBL:CCL30803.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_93_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5007..5480
DNA (474bp) protein (158aa)
PTS system, fructose subfamily, IIA component domain protein n=64 Tax=Clostridium difficile RepID=T2VXI1_CLODI rbh
PTS system, mannose-specfic IIA component
PTS system, mannose-specfic IIA component {ECO:0000313|EMBL:CCL30804.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_3_scaffold_93_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5483..5791
DNA (309bp) protein (103aa)
PTS system, mannose-specfic IIB component {ECO:0000313|EMBL:CCL30805.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL30805.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrept
PTS system, Fru family, IIB component domain protein n=203 Tax=Clostridium difficile RepID=C9XMT5_CLODC
PTS system transporter subunit IIB
NECEvent2014_2_3_scaffold_93_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5905..7011
DNA (1107bp) protein (369aa)
PTS system, Fru family, IIC component domain protein n=30 Tax=Clostridium difficile RepID=T3GEB0_CLODC rbh
PTS system, Fru family, IIC component domain protein {ECO:0000313|EMBL:EQE60770.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" s
PTS system, IIC component
NECEvent2014_2_3_scaffold_93_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7086..9764
DNA (2679bp) protein (893aa)
putative glycoside hydrolase, family 38;putative alpha-mannosidase (EC:3.2.1.24)
Putative glycoside hydrolase, family 38 putative alpha-mannosidase {ECO:0000313|EMBL:CAJ69458.1}; EC=3.2.1.24 {ECO:0000313|EMBL:CAJ69458.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Cl
Alpha mannosidase, middle domain protein n=33 Tax=Clostridium difficile RepID=T3GDC7_CLODC rbh
NECEvent2014_2_3_scaffold_93_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10081..12417)
DNA (2337bp) protein (779aa)
Two-component sensor histidine kinase {ECO:0000313|EMBL:CKH37187.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CKH37187.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcac
Two-component sensor histidine kinase n=6 Tax=Clostridium difficile RepID=U3WBH0_CLODI rbh
two-component sensor histidine kinase
NECEvent2014_2_3_scaffold_93_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12389..13105)
DNA (717bp) protein (239aa)
Response regulator n=196 Tax=Clostridium difficile RepID=T3GEA5_CLODC rbh
Two-component response regulator {ECO:0000313|EMBL:CCL22924.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
two-component response regulator
NECEvent2014_2_3_scaffold_93_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13520..14176)
DNA (657bp) protein (219aa)
Nitroreductase family protein n=162 Tax=Clostridium difficile RepID=T3GDA4_CLODC rbh
putative nitroreductase
Nitroreductase family protein {ECO:0000313|EMBL:EQI80370.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_93_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14231..14860)
DNA (630bp) protein (210aa)
putative hydrolase, HAD superfamily, subfamilyIA (EC:3.1.3.-)
Hydrolase {ECO:0000313|EMBL:CKH37276.1}; Putative hydrolase, HAD superfamily, subfamily IA {ECO:0000313|EMBL:CDS88479.1}; EC=3.1.3.- {ECO:0000313|EMBL:CDS88479.1};; Putative hydrolase, HAD superfamily
HAD hydrolase, IA, variant 1 family protein n=156 Tax=Clostridium difficile RepID=T3GHQ9_CLODC rbh
NECEvent2014_2_3_scaffold_93_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14991..15632)
DNA (642bp) protein (214aa)
thiN; Thiamine pyrophosphokinase (TPK) (Thiaminediphospho kinase) (EC:2.7.6.2)
Thiamine pyrophosphokinase (TPK) (Thiamine diphospho kinase) {ECO:0000313|EMBL:CAJ69463.1}; EC=2.7.6.2 {ECO:0000313|EMBL:CAJ69463.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridi
Thiamine pyrophosphokinase n=27 Tax=Clostridium difficile RepID=T3GIA8_CLODC rbh
NECEvent2014_2_3_scaffold_93_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15641..16312)
DNA (672bp) protein (224aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcacea
Ribulose-phosphate 3-epimerase n=148 Tax=Clostridium difficile RepID=C9XMU3_CLODC rbh
ribulose-phosphate 3-epimerase
NECEvent2014_2_3_scaffold_93_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16317..17201)
DNA (885bp) protein (295aa)
Putative ribosome biogenesis gtpase rsga {ECO:0000313|EMBL:CAJ69465.1}; EC=3.6.1.- {ECO:0000313|EMBL:CAJ69465.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoco
Putative ribosome biogenesis GTPase RsgA n=10 Tax=Clostridium difficile RepID=T3GE94_CLODC rbh
ATP/GTP-binding protein
NECEvent2014_2_3_scaffold_93_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17299..18036)
DNA (738bp) protein (246aa)
fabG; 3-oxoacyl-[acyl-carrier-protein] reductase(3-ketoacyl-acyl carrier protein reductase) (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase (3-ketoacyl-acyl carrier protein reductase) {ECO:0000313|EMBL:CDT64987.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CDT64987.1};; 3-oxoacyl-[acyl-carrier-protein] redu
Short chain dehydrogenase family protein n=112 Tax=Clostridium difficile RepID=T3GDA9_CLODC rbh
NECEvent2014_2_3_scaffold_93_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18144..20159)
DNA (2016bp) protein (672aa)
Phosphotransferase enzyme family protein n=156 Tax=Clostridium difficile RepID=T3GHR3_CLODC rbh
Phosphotransferase enzyme family protein {ECO:0000313|EMBL:EQI80376.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pepto
stk; putative serine/threonine-protein kinase andphosphatase
NECEvent2014_2_3_scaffold_93_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20176..20928)
DNA (753bp) protein (251aa)
Phosphatase 2C family protein n=217 Tax=Clostridium difficile RepID=C9XMU7_CLODC rbh
serine/threonine phosphatase
Putative phosphatase, 2C family {ECO:0000313|EMBL:CCK87957.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_93_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20948..21979)
DNA (1032bp) protein (344aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HA
Probable dual-specificity RNA methyltransferase RlmN n=200 Tax=Clostridium difficile RepID=RLMN_CLOD6 rbh
putative radical SAM-family protein
NECEvent2014_2_3_scaffold_93_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21987..23312)
DNA (1326bp) protein (442aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
Ribosomal RNA small subunit methyltransferase n=175 Tax=Clostridium difficile RepID=C9XMU9_CLODC rbh
rsmB; ribosomal RNA small subunit methyltransferase
NECEvent2014_2_3_scaffold_93_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23374..24075)
DNA (702bp) protein (234aa)
Neutral zinc metallopeptidase family protein n=197 Tax=Clostridium difficile RepID=T2TC91_CLODI rbh
membrane-associated neutral zinc metallopeptidase
Putative metal-dependent peptidase {ECO:0000313|EMBL:CCK91389.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
NECEvent2014_2_3_scaffold_93_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24144..24896)
DNA (753bp) protein (251aa)
Uncharacterized protein n=21 Tax=Clostridium difficile RepID=T3GHR8_CLODC rbh
conserved hypothetical protein
Protein of uncharacterised function DUF116 {ECO:0000313|EMBL:CKH37641.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99209.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
NECEvent2014_2_3_scaffold_93_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24906..25835)
DNA (930bp) protein (310aa)
fmt; Methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1496 species="Bac
Methionyl-tRNA formyltransferase n=10 Tax=Clostridium difficile RepID=FMT_CLOD6 rbh
NECEvent2014_2_3_scaffold_93_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25850..26290)
DNA (441bp) protein (147aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=185 Tax=Clostridium difficile RepID=C9XMV3_CLODC
peptide deformylase 2
NECEvent2014_2_3_scaffold_93_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26308..28797)
DNA (2490bp) protein (830aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1151268 species="Bacteria;
Primosomal protein N n=6 Tax=Clostridium difficile RepID=T3GEA2_CLODC rbh
priA; primosomal protein N'
NECEvent2014_2_3_scaffold_93_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29072..30271)
DNA (1200bp) protein (400aa)
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:EQI80320.1}; EC=4.1.1.36 {ECO:0000313|EMBL:EQI80320.1};; TaxID=1151391 species="Bacteria; Firmicutes;
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase n=157 Tax=Clostridium difficile RepID=T3GI95_CLODC rbh
coaBC; coenzyme A biosynthesis bifunctional protein
NECEvent2014_2_3_scaffold_93_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30276..30542)
DNA (267bp) protein (89aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=212 Tax=Clostridium difficile RepID=RPOZ_CLOD6
NECEvent2014_2_3_scaffold_93_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30545..31162)
DNA (618bp) protein (206aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
Guanylate kinase n=92 Tax=Clostridium difficile RepID=T3GE82_CLODC rbh
gmk; guanylate kinase
Displaying items 1-30 of 44 in total

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