ggKbase home page

NECEvent2014_2_3_scaffold_126

Alias: 172_003_scaffold_126

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_126_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(183..809)
DNA (627bp) protein (209aa)
GyrI-like small molecule binding domain protein n=152 Tax=Clostridium difficile RepID=T3GA76_CLODC rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69887.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_126_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(885..1856)
DNA (972bp) protein (324aa)
nrdF; Ribonucleoside-diphosphate reductase subunitbeta (Ribonucleotide reductase small subunit) (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
Ribonucleoside-diphosphate reductase subunit beta n=174 Tax=Clostridium difficile RepID=T3G8J9_CLODC rbh
NECEvent2014_2_3_scaffold_126_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1869..3968)
DNA (2100bp) protein (700aa)
Ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase large subunit) {ECO:0000313|EMBL:CAJ69889.1}; EC=1.17.4.1 {ECO:0000313|EMBL:CAJ69889.1};; TaxID=272563 species="Bacteria; F
nrdE; Ribonucleoside-diphosphate reductase subunitalpha (Ribonucleotide reductase large subunit) (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=6 Tax=Clostridium difficile RepID=T3G7K1_CLODC rbh
NECEvent2014_2_3_scaffold_126_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4446..5171
DNA (726bp) protein (242aa)
Pentapeptide repeats family protein n=48 Tax=Clostridium difficile RepID=T3GCL7_CLODC rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69890.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_126_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5299..6495)
DNA (1197bp) protein (399aa)
iron family ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, iron-family ATP-binding protein {ECO:0000313|EMBL:CAJ69891.1}; EC=3.6.3.- {ECO:0000313|EMBL:CAJ69891.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridial
ABC transporter family protein n=36 Tax=Clostridium difficile RepID=T3GBN7_CLODC rbh
NECEvent2014_2_3_scaffold_126_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6498..7523)
DNA (1026bp) protein (342aa)
FecCD transport family protein n=145 Tax=Clostridium difficile RepID=T3GCK5_CLODC rbh
ABC-type transport system, iron-family permease
ABC-type transport system, iron-family permease {ECO:0000313|EMBL:CCL23354.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source
NECEvent2014_2_3_scaffold_126_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7595..8725)
DNA (1131bp) protein (377aa)
ABC-type transport system, iron-family extracellular solute-binding protein n=157 Tax=Clostridium difficile RepID=Q184J0_CLOD6 rbh
iron ABC transporter substrate-binding protein
ABC-type transport system, iron-family extracellular solute-binding protein {ECO:0000313|EMBL:CCL31250.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
NECEvent2014_2_3_scaffold_126_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9187..10080)
DNA (894bp) protein (298aa)
dapA1; Dihydrodipicolinate synthase 1 (EC:4.3.3.7)
Dihydrodipicolinate synthetase family protein n=193 Tax=Clostridium difficile RepID=T3G8E9_CLODC rbh
Dihydrodipicolinate synthetase family protein {ECO:0000313|EMBL:EQE60052.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="
NECEvent2014_2_3_scaffold_126_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10160..11062)
DNA (903bp) protein (301aa)
Fumarylacetoacetate (FAA) hydrolase family protein n=184 Tax=Clostridium difficile RepID=T3G7F3_CLODC rbh
hydrolase/isomerase/hydratase
Fumarylacetoacetate (FAA) hydrolase family protein {ECO:0000313|EMBL:EQE60030.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sou
NECEvent2014_2_3_scaffold_126_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11112..12272)
DNA (1161bp) protein (387aa)
D-galactarate dehydratase / Altronate hydrolase family protein n=166 Tax=Clostridium difficile RepID=C9XQ22_CLODC rbh
carbohydrate hydrolase
D-galactarate dehydratase / Altronate hydrolase family protein {ECO:0000313|EMBL:EQG74324.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
NECEvent2014_2_3_scaffold_126_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12428..12733)
DNA (306bp) protein (102aa)
SAF domain protein n=141 Tax=Clostridium difficile RepID=T3GCK9_CLODC
putative N-terminus region of carbohydratehydrolase, SAF domain
SAF domain protein {ECO:0000313|EMBL:EQG74340.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
NECEvent2014_2_3_scaffold_126_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12831..13805)
DNA (975bp) protein (325aa)
2-keto-3-deoxygluconate permease family protein n=198 Tax=Clostridium difficile RepID=C9XQ24_CLODC rbh
2-keto-3-deoxygluconate permease
2-keto-3-deoxygluconate permease 2 {ECO:0000313|EMBL:CCL31255.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
NECEvent2014_2_3_scaffold_126_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14387..15163
DNA (777bp) protein (259aa)
Bacterial transcriptional regulator family protein n=193 Tax=Clostridium difficile RepID=C9XQ25_CLODC rbh
IclR family transcriptional regulator
Bacterial transcriptional regulator family protein {ECO:0000313|EMBL:EQE60048.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sou
NECEvent2014_2_3_scaffold_126_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15496..16641
DNA (1146bp) protein (382aa)
Alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase {ECO:0000313|EMBL:CEJ99646.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CEJ99646.1};; Alcohol dehydrogenase 2 {ECO:0000313|EMBL:CDS89413.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CDS89413.1};; TaxID=
Iron-containing alcohol dehydrogenase family protein n=108 Tax=Clostridium difficile RepID=T3G796_CLODC rbh
NECEvent2014_2_3_scaffold_126_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16796..17647)
DNA (852bp) protein (284aa)
Bacterial SH3 domain protein n=88 Tax=Clostridium difficile RepID=T3GBH3_CLODC rbh
SH3 domain protein {ECO:0000313|EMBL:EHJ33061.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 0
uncharacterised protein with SH3 domain
NECEvent2014_2_3_scaffold_126_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17783..18205)
DNA (423bp) protein (141aa)
Uncharacterized protein n=89 Tax=Clostridium difficile RepID=T3GCF4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31259.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_126_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18867..20255)
DNA (1389bp) protein (463aa)
Pyridine nucleotide-disulfide oxidoreductase family protein n=44 Tax=Clostridium difficile RepID=T3GCE8_CLODC rbh
putative pyridine nucleotide-disulphideoxidoreductase, class I
Putative pyridine nucleotide-disulphide oxidoreductase, class I {ECO:0000313|EMBL:CAJ69903.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
NECEvent2014_2_3_scaffold_126_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20376..21653)
DNA (1278bp) protein (426aa)
Thioredoxin family protein n=70 Tax=Clostridium difficile RepID=T3G9W9_CLODC rbh
putative cytochrome C assembly protein
Cytochrome c-type biogenesis protein {ECO:0000313|EMBL:CKG86569.1}; Putative cytochrome C assembly protein {ECO:0000313|EMBL:CDS94477.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostrid
NECEvent2014_2_3_scaffold_126_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21790..22125)
DNA (336bp) protein (112aa)
HxlR-like helix-turn-helix family protein n=196 Tax=Clostridium difficile RepID=C9XQ31_CLODC
transcriptional regulator
HxlR-like helix-turn-helix family protein {ECO:0000313|EMBL:EQE60062.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_3_scaffold_126_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22594..25194)
DNA (2601bp) protein (867aa)
Glycosyl hydrolase {ECO:0000313|EMBL:CKG86510.1}; EC=3.2.1.170 {ECO:0000313|EMBL:CKG86510.1};; Putative alpha-mannosidase {ECO:0000313|EMBL:CEJ99652.1}; EC=3.2.1.24 {ECO:0000313|EMBL:CEJ99652.1};; Tax
putative alpha-mannosidase (EC:3.2.1.24)
Alpha mannosidase, middle domain protein n=6 Tax=Clostridium difficile RepID=T3GCD4_CLODC rbh
NECEvent2014_2_3_scaffold_126_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25314..26414)
DNA (1101bp) protein (367aa)
PTS system, IIc component n=203 Tax=Clostridium difficile RepID=C9XQ33_CLODC rbh
PTS system, IIc component
PTS system, Fru family, IIC component domain protein {ECO:0000313|EMBL:EQG74298.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" s
NECEvent2014_2_3_scaffold_126_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26430..26750)
DNA (321bp) protein (107aa)
PTS system, mannose-specfic IIB component {ECO:0000313|EMBL:CCK99491.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCK99491.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrept
PTS system, Fru family, IIB component domain protein n=208 Tax=Clostridium difficile RepID=C9XQ34_CLODC
PTS system transporter subunit IIB
NECEvent2014_2_3_scaffold_126_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26753..27214)
DNA (462bp) protein (154aa)
PTS system, fructose subfamily, IIA component domain protein n=182 Tax=Clostridium difficile RepID=T3G782_CLODC
PTS system mannose-specfic transporter subunit IIA
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EHJ31881.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pepto
NECEvent2014_2_3_scaffold_126_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27214..29178)
DNA (1965bp) protein (655aa)
Transcription antiterminator, PTS operon regulator n=27 Tax=Clostridium difficile RepID=Q184K6_CLOD6 rbh
Transcription antiterminator {ECO:0000313|EMBL:CKG86391.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
Transcription antiterminator, PTS operonregulator
NECEvent2014_2_3_scaffold_126_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29326..30198
DNA (873bp) protein (291aa)
Sugar transport family protein n=146 Tax=Clostridium difficile RepID=T2TEU9_CLODI rbh
sugar uptake protein
Putative sugar uptake protein {ECO:0000313|EMBL:CBE06479.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_126_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30443..30910)
DNA (468bp) protein (156aa)
C_GCAxxG_C_C family protein n=178 Tax=Clostridium difficile RepID=T3G9V8_CLODC rbh
redox-active protein
Putative redox-active protein {ECO:0000313|EMBL:CCL31270.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_126_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31015..31947)
DNA (933bp) protein (311aa)
C4-dicarboxylate transporter/malic acid transport family protein n=13 Tax=Clostridium difficile RepID=T3G875_CLODC rbh
putative transporter
Putative transporter {ECO:0000313|EMBL:CAJ69913.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
NECEvent2014_2_3_scaffold_126_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32316..33059)
DNA (744bp) protein (248aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T3G786_CLODC rbh
Domain of uncharacterised function (DUF1848) {ECO:0000313|EMBL:CKG86293.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
hypothetical protein
NECEvent2014_2_3_scaffold_126_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33403..34839)
DNA (1437bp) protein (479aa)
Pectate lyase superfamily protein n=28 Tax=Clostridium difficile RepID=T3GB82_CLODC rbh
conserved hypothetical protein
Pectate lyase superfamily protein {ECO:0000313|EMBL:CKG86268.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99661.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrept
NECEvent2014_2_3_scaffold_126_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35049..36449)
DNA (1401bp) protein (467aa)
Pectate lyase superfamily protein n=35 Tax=Clostridium difficile RepID=T3GC63_CLODC rbh
conserved hypothetical protein
Pectate lyase superfamily protein {ECO:0000313|EMBL:CKG86246.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99662.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrept
Displaying items 1-30 of 33 in total

View Taxonomy