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NECEvent2014_2_3_scaffold_133

Alias: 172_003_scaffold_133

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_133_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(212..493)
DNA (282bp) protein (94aa)
Uncharacterized protein n=175 Tax=Clostridium difficile RepID=Q181F3_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ26635.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_133_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(715..2244)
DNA (1530bp) protein (510aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
Lysine--tRNA ligase n=21 Tax=Clostridium difficile RepID=T3G017_CLODC rbh
lysS; lysyl-tRNA synthetase
NECEvent2014_2_3_scaffold_133_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2259..2738)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=215 Tax=Clostridium difficile RepID=GREA_CLOD6 rbh
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1215061 species="Bacteri
NECEvent2014_2_3_scaffold_133_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2847..3815)
DNA (969bp) protein (323aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
tRNA-dihydrouridine synthase n=176 Tax=Clostridium difficile RepID=C9XSF8_CLODC rbh
dusB; tRNA-dihydrouridine synthase
NECEvent2014_2_3_scaffold_133_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3952..4722)
DNA (771bp) protein (257aa)
coaX; Type III pantothenate kinase (Pantothenic acidkinase) (PanK-III) (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-R
Type III pantothenate kinase n=6 Tax=Clostridium difficile RepID=COAX_CLOD6 rbh
NECEvent2014_2_3_scaffold_133_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4741..5358)
DNA (618bp) protein (206aa)
Uncharacterized protein n=178 Tax=Clostridium difficile RepID=G6BRF2_CLODI rbh
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE07445.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_133_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5515..6483)
DNA (969bp) protein (323aa)
Peptidase S58 family protein n=128 Tax=Clostridium difficile RepID=C9XSG1_CLODC rbh
peptidase
Peptidase {ECO:0000313|EMBL:CKG69661.1}; Putative peptidase {ECO:0000313|EMBL:CEK00273.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.
NECEvent2014_2_3_scaffold_133_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6476..7453)
DNA (978bp) protein (326aa)
birA; bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=120 Tax=Clostridium difficile RepID=T3FZB7_CLODC rbh
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978
NECEvent2014_2_3_scaffold_133_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7768..9762)
DNA (1995bp) protein (665aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptos
ATP-dependent zinc metalloprotease FtsH n=10 Tax=Clostridium difficile RepID=C9XSG3_CLODC rbh
ftsH2; cell division protein
NECEvent2014_2_3_scaffold_133_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9772..11160)
DNA (1389bp) protein (463aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine
tRNA(Ile)-lysidine synthase n=162 Tax=Clostridium difficile RepID=TILS_CLOD6 rbh
ATPase
NECEvent2014_2_3_scaffold_133_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11343..11771)
DNA (429bp) protein (143aa)
Uncharacterized protein n=25 Tax=Clostridium difficile RepID=C9XSG5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE07453.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_133_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11788..12594)
DNA (807bp) protein (269aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pepto
Glutamate racemase n=201 Tax=Clostridium difficile RepID=C9XSG6_CLODC rbh
glutamate racemase
NECEvent2014_2_3_scaffold_133_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12796..13302)
DNA (507bp) protein (169aa)
Cell Wall Hydrolase family protein n=1 Tax=Clostridium difficile F253 RepID=T4A9H8_CLODI rbh
spore cortex-lytic enzyme
Putative spore cortex-lytic enzyme {ECO:0000313|EMBL:CDS90200.1}; Putative spore cortex-lytic hydrolase {ECO:0000313|EMBL:CEK00279.1}; Spore cortex-lytic enzyme {ECO:0000313|EMBL:CKG69492.1}; Spore-co
NECEvent2014_2_3_scaffold_133_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13332..13991)
DNA (660bp) protein (220aa)
Stage II sporulation protein n=211 Tax=Clostridium difficile RepID=C9XSG8_CLODC rbh
stage II sporulation protein
Pro-sigma(E) endopeptidase (Stage II sporulation) {ECO:0000313|EMBL:CCL31802.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sour
NECEvent2014_2_3_scaffold_133_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14135..14851)
DNA (717bp) protein (239aa)
FCD domain protein n=3 Tax=Clostridium difficile RepID=G6B3Q4_CLODI rbh
FCD domain protein {ECO:0000313|EMBL:EHJ26621.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 0
GntR family transcriptional regulator
NECEvent2014_2_3_scaffold_133_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14799..15689)
DNA (891bp) protein (297aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:M
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=167 Tax=Clostridium difficile RepID=ISPE_CLOD6 rbh
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
NECEvent2014_2_3_scaffold_133_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15807..17357)
DNA (1551bp) protein (517aa)
LysM domain protein n=73 Tax=Clostridium difficile RepID=T3G2W0_CLODC rbh
sipL; spore coat protein
Putative phage cell wall hydrolase {ECO:0000313|EMBL:CCL31805.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
NECEvent2014_2_3_scaffold_133_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17451..17759)
DNA (309bp) protein (103aa)
Uncharacterized protein n=33 Tax=Clostridium difficile RepID=D5QA10_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH05266.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
hypothetical protein
NECEvent2014_2_3_scaffold_133_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17865..18725)
DNA (861bp) protein (287aa)
Sporulation-specific protease n=217 Tax=Clostridium difficile RepID=Q181G9_CLOD6 rbh
peptidase
Sporulation-specific protease {ECO:0000313|EMBL:CCK96060.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_133_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18809..19747)
DNA (939bp) protein (313aa)
Putative peptidase, M19 family {ECO:0000313|EMBL:CCL24044.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CCL24044.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
Membrane dipeptidase family protein n=134 Tax=Clostridium difficile RepID=C9XSH4_CLODC rbh
dipeptidase
NECEvent2014_2_3_scaffold_133_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19857..20018)
DNA (162bp) protein (54aa)
Uncharacterized protein n=213 Tax=Clostridium difficile RepID=C9XSH5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE58762.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_133_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20028..20525)
DNA (498bp) protein (166aa)
Uncharacterized protein n=191 Tax=Clostridium difficile RepID=Q181H5_CLOD6 rbh
hypothetical protein
Putative preprotein translocase {ECO:0000313|EMBL:CBE07474.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
NECEvent2014_2_3_scaffold_133_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20640..21350)
DNA (711bp) protein (237aa)
Uncharacterized protein n=180 Tax=Clostridium difficile RepID=C9XSH7_CLODC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70479.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_133_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21526..22056)
DNA (531bp) protein (177aa)
Uncharacterized protein n=139 Tax=Clostridium difficile RepID=T3G2T9_CLODC rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL24048.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_133_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22073..22303)
DNA (231bp) protein (77aa)
Uncharacterized protein n=91 Tax=Clostridium difficile RepID=Q181H7_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL24049.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_133_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22318..23712)
DNA (1395bp) protein (465aa)
Solute symporter family protein n=166 Tax=Clostridium difficile RepID=T3G1L2_CLODC rbh
putative sodium:solute symporter
Solute symporter family protein {ECO:0000313|EMBL:EQE58752.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_133_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23838..25091)
DNA (1254bp) protein (418aa)
Major Facilitator Superfamily protein n=161 Tax=Clostridium difficile RepID=T3FZW4_CLODC rbh
major facilitator superfamily transporter
Major Facilitator Superfamily protein {ECO:0000313|EMBL:EQE58758.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
NECEvent2014_2_3_scaffold_133_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25142..26296)
DNA (1155bp) protein (385aa)
mdeA; methionine gamma-lyase (EC:4.4.1.11)
Methionine gamma-lyase {ECO:0000313|EMBL:CDS93084.1}; EC=4.4.1.11 {ECO:0000313|EMBL:CDS93084.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclost
Methionine gamma-lyase n=28 Tax=Clostridium difficile RepID=T3FZ53_CLODC rbh
NECEvent2014_2_3_scaffold_133_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26856..27425)
DNA (570bp) protein (190aa)
Resolvase n=194 Tax=Clostridium difficile RepID=Q181H9_CLOD6 rbh
resolvase
Resolvase {ECO:0000313|EMBL:CCL31817.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
NECEvent2014_2_3_scaffold_133_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27628..27855
DNA (228bp) protein (76aa)
Uncharacterized protein n=187 Tax=Clostridium difficile RepID=C9XSI4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL00020.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
Displaying items 1-30 of 40 in total

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