ggKbase home page

NECEvent2014_2_3_scaffold_138

Alias: 172_003_scaffold_138

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_138_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..1239
DNA (1239bp) protein (413aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T2VKL8_CLODI rbh
Putative membrane protein {ECO:0000313|EMBL:CDS95574.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
hypothetical protein
NECEvent2014_2_3_scaffold_138_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1490..3517
DNA (2028bp) protein (676aa)
cwp6; putative N-acetylmuramoyl-L-alanineamidase,autolysin cwp6 (EC:3.5.1.28)
Putative N-acetylmuramoyl-L-alanine amidase,autolysin cwp6 {ECO:0000313|EMBL:CAJ69672.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CAJ69672.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridia
N-acetylmuramoyl-L-alanine amidase family protein n=11 Tax=Clostridium difficile RepID=T3GBR6_CLODC rbh
NECEvent2014_2_3_scaffold_138_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3737..4423
DNA (687bp) protein (229aa)
Bacterial sugar transferase family protein n=217 Tax=Clostridium difficile RepID=T3GE45_CLODC rbh
glycosyltransferase
Putative glycosyl transferase {ECO:0000313|EMBL:CCL31060.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_138_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4518..5573
DNA (1056bp) protein (352aa)
Cell wall binding repeat 2 family protein n=5 Tax=Clostridium difficile RepID=T3GDF3_CLODC rbh
Cell wall binding protein {ECO:0000313|EMBL:CDS95592.1}; Putative cell wall binding repeat 2 {ECO:0000313|EMBL:CDS89121.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptost
cwp7; Cell wall binding protein cwp7
NECEvent2014_2_3_scaffold_138_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5688..7244
DNA (1557bp) protein (519aa)
Transmembrane virulence factor, MviN family protein n=161 Tax=Clostridium difficile RepID=Q183L8_CLOD6 rbh
mviN; transmembrane virulence factor
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
NECEvent2014_2_3_scaffold_138_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7290..8996
DNA (1707bp) protein (569aa)
pgm; phosphoglucomutase (EC:5.4.2.2)
Alpha-phosphoglucomutase {ECO:0000313|EMBL:CEJ99408.1}; EC=5.4.2.2 {ECO:0000313|EMBL:CEJ99408.1};; Phosphomannomutase/phosphoglycerate mutase {ECO:0000313|EMBL:CKH86944.1}; EC=5.4.2.2 {ECO:0000313|EMB
Phosphoglucomutase/phosphomannomutase, C-terminal domain protein n=92 Tax=Clostridium difficile RepID=T3GA36_CLODC rbh
NECEvent2014_2_3_scaffold_138_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9018..10091
DNA (1074bp) protein (358aa)
manC; putative mannose-1-phosphateguanylyltransferase (EC:2.7.7.22)
Nucleotidyl transferase family protein n=196 Tax=Clostridium difficile RepID=T3GBR2_CLODC rbh
Nucleotidyl transferase family protein {ECO:0000313|EMBL:EQE60194.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_138_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10103..10825
DNA (723bp) protein (241aa)
Uncharacterized protein n=143 Tax=Clostridium difficile RepID=G6B4K5_CLODI rbh
polysaccharide biosynthesis protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ33197.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_138_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10841..11998
DNA (1158bp) protein (386aa)
Uncharacterized protein n=115 Tax=Clostridium difficile RepID=G6B4K4_CLODI rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:EQG74118.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_138_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12001..12840
DNA (840bp) protein (280aa)
Glycosyl transferase {ECO:0000313|EMBL:CKH86831.1}; EC=2.4.1.- {ECO:0000313|EMBL:CKH86831.1};; Putative glycosyl transferase, family 2 {ECO:0000313|EMBL:CEJ99404.1}; TaxID=1496 species="Bacteria; Firm
Glycosyl transferase 2 family protein n=192 Tax=Clostridium difficile RepID=T3GBV9_CLODC rbh
putative glycosyl transferase, family 2
NECEvent2014_2_3_scaffold_138_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12855..14030
DNA (1176bp) protein (392aa)
Poly(Glycerophosphate) glycerophosphotransferase family protein n=156 Tax=Clostridium difficile RepID=T3GE80_CLODC rbh
minor teichoic acid biosynthesis protein
Putative glycerophosphotransferase {ECO:0000313|EMBL:CCL23140.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
NECEvent2014_2_3_scaffold_138_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14059..14808
DNA (750bp) protein (250aa)
family 2 glycosyl transferase (EC:2.4.1.-)
Putative glycosyl transferase, family 2 {ECO:0000313|EMBL:CCK99267.1}; EC=2.4.1.- {ECO:0000313|EMBL:CCK99267.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoco
Glycosyl transferase 2 family protein n=192 Tax=Clostridium difficile RepID=T3GDJ6_CLODC rbh
NECEvent2014_2_3_scaffold_138_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14830..15738
DNA (909bp) protein (303aa)
Glycosyl transferase 2 family protein n=190 Tax=Clostridium difficile RepID=C9XP77_CLODC rbh
beta-glycosyltransferase
Putative glycosyl transferase, family 2 {ECO:0000313|EMBL:CCL31050.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
NECEvent2014_2_3_scaffold_138_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15786..16538
DNA (753bp) protein (251aa)
Glycosyl transferase 2 family protein n=206 Tax=Clostridium difficile RepID=C9XP76_CLODC rbh
teichuronic acid biosynthesis glycosyl transferase
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EHJ33191.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pep
NECEvent2014_2_3_scaffold_138_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16492..17859
DNA (1368bp) protein (456aa)
Nucleotide sugar dehydrogenase n=2 Tax=Clostridium difficile RepID=G6BF58_CLODI rbh
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EHJ32697.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
putative UDP-glucose 6-dehydrogenase
NECEvent2014_2_3_scaffold_138_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17865..18956
DNA (1092bp) protein (364aa)
Glycosyl transferases group 1 family protein n=183 Tax=Clostridium difficile RepID=C9XP74_CLODC rbh
capsular polysaccharide biosynthesis glycosyl transferase
Glycosyl transferases group 1 family protein {ECO:0000313|EMBL:EQE60225.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="P
NECEvent2014_2_3_scaffold_138_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19040..20953
DNA (1914bp) protein (638aa)
Short chain dehydrogenase family protein n=38 Tax=Clostridium difficile RepID=T3GDJ1_CLODC rbh
Putative epimerase/dehydratase WbiI {ECO:0000313|EMBL:EHJ32699.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
polysaccharide biosynthesis protein
NECEvent2014_2_3_scaffold_138_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21155..21859
DNA (705bp) protein (235aa)
Uncharacterized protein n=41 Tax=Clostridium difficile RepID=T2VM40_CLODI rbh
putative cell-wall hydrolase
Putative cell-wall hydrolase {ECO:0000313|EMBL:CAJ69656.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium d
NECEvent2014_2_3_scaffold_138_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22161..24272
DNA (2112bp) protein (704aa)
Cell surface protein {ECO:0000313|EMBL:CKH86463.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CKH86463.1};; Cell surface protein cwp19 {ECO:0000313|EMBL:CEJ99395.1}; Cwp19 {ECO:0000313|EMBL:AFV69489.1}; Putative
Melibiase family protein n=132 Tax=Clostridium difficile RepID=T3GA68_CLODC rbh
cwp19; Cell surface protein cwp19
NECEvent2014_2_3_scaffold_138_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24470..25435)
DNA (966bp) protein (322aa)
Cell envelope-related function transcriptional attenuator common domain protein n=13 Tax=Clostridium difficile RepID=T3GBU9_CLODC rbh
Putative penicillin-binding protein repressor {ECO:0000313|EMBL:CDS89088.1}; Transcriptional regulator, LytR family {ECO:0000313|EMBL:CDS95694.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia;
penicillin-binding protein repressor
NECEvent2014_2_3_scaffold_138_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25720..26676)
DNA (957bp) protein (319aa)
Cell envelope-related function transcriptional attenuator common domain protein n=131 Tax=Clostridium difficile RepID=T3GEB3_CLODC rbh
Cell envelope-related function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EQG74597.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococca
penicillin-binding protein repressor
NECEvent2014_2_3_scaffold_138_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27044..27832
DNA (789bp) protein (263aa)
Putative hydrolase, HAD superfamily, IIB subfamily {ECO:0000313|EMBL:CCL23128.1}; EC=3.1.3.- {ECO:0000313|EMBL:CCL23128.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pep
HAD hydrolase, IIB family protein n=184 Tax=Clostridium difficile RepID=T3GDN0_CLODC rbh
hydrolase
NECEvent2014_2_3_scaffold_138_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27955..28425)
DNA (471bp) protein (157aa)
Uncharacterized protein n=205 Tax=Clostridium difficile RepID=T2TAN8_CLODI rbh
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:EQE60286.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_138_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28564..29208
DNA (645bp) protein (215aa)
Putative undecaprenyl pyrophosphate synthetase {ECO:0000313|EMBL:CCK99255.1}; EC=2.5.1.31 {ECO:0000313|EMBL:CCK99255.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptos
Undecaprenyl pyrophosphate synthetase n=205 Tax=Clostridium difficile RepID=C9XP66_CLODC rbh
UDP pyrophosphate synthetase
NECEvent2014_2_3_scaffold_138_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29332..30156
DNA (825bp) protein (275aa)
Putative N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCL23125.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CCL23125.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostre
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase family protein n=118 Tax=Clostridium difficile RepID=T3GBZ1_CLODC rbh
NECEvent2014_2_3_scaffold_138_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30471..32018
DNA (1548bp) protein (516aa)
Cyclic diguanylate phosphodiesterase domain protein n=95 Tax=Clostridium difficile RepID=G6BTI8_CLODI rbh
putative signaling protein
Putative signaling protein {ECO:0000313|EMBL:CCL23124.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium di
NECEvent2014_2_3_scaffold_138_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32021..32419
DNA (399bp) protein (133aa)
Transcriptional regulator family protein n=207 Tax=Clostridium difficile RepID=C9XP63_CLODC
hypothetical protein
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:CCL31030.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_138_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32459..34192
DNA (1734bp) protein (578aa)
putative N6 adenine-specific DNAmethyltransferase, N12 class (EC:2.1.1.72)
Eco57I restriction endonuclease n=155 Tax=Clostridium difficile RepID=G6BF72_CLODI rbh
Eco57I restriction-modification methylase family protein {ECO:0000313|EMBL:EQE60282.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.
NECEvent2014_2_3_scaffold_138_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34424..35635
DNA (1212bp) protein (404aa)
Patatin-like phospholipase family protein n=136 Tax=Clostridium difficile RepID=C9XP61_CLODC rbh
phospholipase
Patatin-like phospholipase family protein {ECO:0000313|EMBL:EQE60241.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_3_scaffold_138_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35828..36088
DNA (261bp) protein (87aa)
Histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein) {ECO:0000313|EMBL:CDS89062.1}; PTS system%2C phosphocarrier protein {ECO:0000313|EMBL:CKH86143.1}; EC=2
PTS system, phosphocarrier protein n=220 Tax=Clostridium difficile RepID=C9XP60_CLODC
ptsH; PTS system, HPr protein
Displaying 30 items

View Taxonomy