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NECEvent2014_2_3_scaffold_193

Alias: 172_003_scaffold_193

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_193_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(124..351)
DNA (228bp) protein (76aa)
30S ribosomal protein S18 n=219 Tax=Clostridium difficile RepID=RS18_CLOD6
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium di
NECEvent2014_2_3_scaffold_193_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(370..804)
DNA (435bp) protein (145aa)
Single-stranded DNA-binding protein n=204 Tax=Clostridium difficile RepID=C9XSW4_CLODC
ssb; single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=997827 species="Bacteria; Firmicutes; Clostrid
NECEvent2014_2_3_scaffold_193_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(841..1119)
DNA (279bp) protein (93aa)
30S ribosomal protein S6 n=207 Tax=Clostridium difficile RepID=RS6_CLOD6
30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_193_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1333..2529)
DNA (1197bp) protein (399aa)
aminotransferase (EC:2.6.1.-)
2-aminoadipate transaminase {ECO:0000313|EMBL:CDS90420.1}; EC=2.6.1.39 {ECO:0000313|EMBL:CDS90420.1};; Amino acid aminotransferase {ECO:0000313|EMBL:CKG66193.1}; EC=2.6.1.39 {ECO:0000313|EMBL:CKG66193
Multiple substrate aminotransferase n=196 Tax=Clostridium difficile RepID=T3FWL6_CLODC rbh
NECEvent2014_2_3_scaffold_193_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2628..2816)
DNA (189bp) protein (63aa)
Uncharacterized protein n=176 Tax=Clostridium difficile RepID=C9XSW7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70574.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_193_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2831..3094)
DNA (264bp) protein (88aa)
Uncharacterized protein n=207 Tax=Clostridium difficile RepID=C9XSW8_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70575.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_193_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3167..3769)
DNA (603bp) protein (201aa)
Uncharacterized protein n=187 Tax=Clostridium difficile RepID=C9XSW9_CLODC rbh
hypothetical protein
Selenium metabolism protein yedf {ECO:0000313|EMBL:CAJ70576.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_193_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3874..5166)
DNA (1293bp) protein (431aa)
Helix-turn-helix family protein n=99 Tax=Clostridium difficile RepID=T3FXH9_CLODC rbh
transcriptional regulator
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EHJ28951.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_193_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5426..6001
DNA (576bp) protein (192aa)
Sporulation and spore germination family protein n=66 Tax=Clostridium difficile RepID=T3G0D2_CLODC rbh
intron RNA domain IV
Putative exported protein {ECO:0000313|EMBL:CAJ70578.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_193_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6135..7277)
DNA (1143bp) protein (381aa)
putative cysteine desulfurase family protein (EC:2.8.1.7)
Putative cysteine desulfurase family protein {ECO:0000313|EMBL:CEK00391.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CEK00391.1};; Selenocysteine lyase {ECO:0000313|EMBL:CKG66002.1}; EC=2.8.1.7 {ECO:0000313|EMBL:
Aminotransferase class-V family protein n=64 Tax=Clostridium difficile RepID=T3G1C6_CLODC rbh
NECEvent2014_2_3_scaffold_193_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7310..8173)
DNA (864bp) protein (288aa)
Stage 0 sporulation protein J n=211 Tax=Clostridium difficile RepID=C9XSX3_CLODC rbh
spo0J; stage 0 sporulation protein J
Stage 0 sporulation protein J {ECO:0000313|EMBL:EQE58644.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_193_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8175..8948)
DNA (774bp) protein (258aa)
Sporulation initiation inhibitor protein soj n=59 Tax=Clostridium difficile RepID=T3FXG4_CLODC rbh
soj; Transcriptional regulator, sporulationinitiation inhibitor, chromosome partitioning protein
Chromosome partitioning protein transcriptional regulator {ECO:0000313|EMBL:CDS90437.1}; Sporulation initiation inhibitor {ECO:0000313|EMBL:CKG65918.1}; Transcriptional regulator, sporulation initiati
NECEvent2014_2_3_scaffold_193_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9083..9868)
DNA (786bp) protein (262aa)
ParB/RepB/Spo0J family partition domain protein n=211 Tax=Clostridium difficile RepID=C9XSX5_CLODC rbh
stage 0 sporulation protein
Putative nucleoid occlusion protein {ECO:0000313|EMBL:EHJ28961.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
NECEvent2014_2_3_scaffold_193_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10031..10750)
DNA (720bp) protein (240aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA
Ribosomal RNA small subunit methyltransferase G n=52 Tax=Clostridium difficile RepID=T3G0D8_CLODC rbh
gidB; 16S rRNA methyltransferase GidB
NECEvent2014_2_3_scaffold_193_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10743..12638)
DNA (1896bp) protein (632aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=64 Tax=Clostridium difficile RepID=MNMG_CLOD6 rbh
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000255|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000255|HAMAP-Rule:MF_00129}; TaxID=272563 species="Bacter
mnmG; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
NECEvent2014_2_3_scaffold_193_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12733..14112)
DNA (1380bp) protein (460aa)
mnmE; tRNA modification GTPase TrmE (EC:3.6.-.-)
tRNA modification GTPase MnmE {ECO:0000255|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000255|HAMAP-Rule:MF_00379};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococca
tRNA modification GTPase MnmE n=126 Tax=Clostridium difficile RepID=MNME_CLOD6 rbh
NECEvent2014_2_3_scaffold_193_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14224..14853)
DNA (630bp) protein (210aa)
R3H domain protein n=188 Tax=Clostridium difficile RepID=G6BQI9_CLODI rbh
SpoIIIJ-associated RNA/ssDNA-binding protein Jag
Putative SpoIIIJ-associated RNA/ssDNA-binding protein Jag {ECO:0000313|EMBL:CCL31917.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium
NECEvent2014_2_3_scaffold_193_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14822..15529)
DNA (708bp) protein (236aa)
Membrane insertase, YidC/Oxa1 family domain protein n=210 Tax=Clostridium difficile RepID=C9XSY0_CLODC rbh
sporulation membrane protein
Membrane insertase, YidC/Oxa1 family domain protein {ECO:0000313|EMBL:EQE58612.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
NECEvent2014_2_3_scaffold_193_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15561..15818)
DNA (258bp) protein (86aa)
Putative membrane protein insertion efficiency factor n=64 Tax=Clostridium difficile RepID=G6BQI7_CLODI
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrept
hypothetical protein
NECEvent2014_2_3_scaffold_193_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15844..16188)
DNA (345bp) protein (115aa)
rnpA; ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component n=205 Tax=Clostridium difficile RepID=RNPA_CLOD6
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rul
NECEvent2014_2_3_scaffold_193_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16266..16403)
DNA (138bp) protein (46aa)
50S ribosomal protein L34 n=220 Tax=Clostridium difficile RepID=C9XSY3_CLODC
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_3_scaffold_193_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17062..18381
DNA (1320bp) protein (440aa)
Chromosomal replication initiator protein DnaA n=217 Tax=Clostridium difficile RepID=C9XIB3_CLODC rbh
dnaA; chromosomal replication initiation protein
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococ
NECEvent2014_2_3_scaffold_193_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18623..19729
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1215061 species="Bacte
DNA polymerase III subunit beta n=205 Tax=Clostridium difficile RepID=T3ILJ2_CLODC rbh
dnaN; DNA polymerase III subunit beta
NECEvent2014_2_3_scaffold_193_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19866..20072
DNA (207bp) protein (69aa)
S4 domain protein n=211 Tax=Clostridium difficile RepID=T3IKA0_CLODC
RNA-binding mediating protein
Putative RNA-binding mediating protein {ECO:0000313|EMBL:CCK94035.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_193_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20090..21205
DNA (1116bp) protein (372aa)
DNA replication and repair protein RecF n=178 Tax=Clostridium difficile RepID=RECF_CLOD6 rbh
DNA replication and repair protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
NECEvent2014_2_3_scaffold_193_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21206..23107
DNA (1902bp) protein (634aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1496 species="Bacteria; Firm
DNA gyrase subunit B n=128 Tax=Clostridium difficile RepID=C9XIB7_CLODC rbh
gyrB; DNA gyrase subunit B
NECEvent2014_2_3_scaffold_193_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23127..25553
DNA (2427bp) protein (809aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pe
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=156 Tax=Clostridium difficile RepID=Q18C90_CLOD6 rbh
NECEvent2014_2_3_scaffold_193_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25622..25918
DNA (297bp) protein (99aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=Q18C91_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL28908.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_193_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25918..26178
DNA (261bp) protein (87aa)
Uncharacterized protein n=216 Tax=Clostridium difficile RepID=Q18C95_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG73158.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_193_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26190..26507
DNA (318bp) protein (106aa)
Anti-sigma factor antagonist n=11 Tax=Clostridium difficile RepID=T2XC16_CLODI
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
anti-sigma-B factor antagonist
Displaying items 1-30 of 32 in total

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