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NECEvent2014_2_3_scaffold_200

Alias: 172_003_scaffold_200

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_200_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(190..861)
DNA (672bp) protein (224aa)
DHH family protein n=143 Tax=Clostridium difficile RepID=T3HU47_CLODC rbh
Group I intron
Putative rna-binding protein {ECO:0000313|EMBL:CEJ97892.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_200_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(851..1231)
DNA (381bp) protein (127aa)
Ribosome-binding factor A n=192 Tax=Clostridium difficile RepID=RBFA_CLOD6
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_3_scaffold_200_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1274..3214)
DNA (1941bp) protein (647aa)
Translation initiation factor IF-2 n=203 Tax=Clostridium difficile RepID=IF2_CLOD6 rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pept
infB; translation initiation factor IF-2
NECEvent2014_2_3_scaffold_200_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3236..3547)
DNA (312bp) protein (104aa)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 n=217 Tax=Clostridium difficile RepID=Q18BH0_CLOD6
ribosomal protein
Ribosomal L7Ae/L30e/S12e/Gadd45 family protein {ECO:0000313|EMBL:EQG77412.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source=
NECEvent2014_2_3_scaffold_200_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3537..3818)
DNA (282bp) protein (94aa)
Uncharacterized protein n=66 Tax=Clostridium difficile RepID=C9XP38_CLODC
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CAJ68165.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_200_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3825..4979)
DNA (1155bp) protein (385aa)
Transcription termination factor NusA n=175 Tax=Clostridium difficile RepID=T3HU44_CLODC rbh
nusA; Transcription elongation protein
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium
NECEvent2014_2_3_scaffold_200_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5009..5470)
DNA (462bp) protein (154aa)
Ribosome maturation factor RimP n=206 Tax=Clostridium difficile RepID=RIMP_CLOD6 rbh
hypothetical protein
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptocl
NECEvent2014_2_3_scaffold_200_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5674..9972)
DNA (4299bp) protein (1433aa)
dnaF; PolC-type DNA polymerase III (EC:2.7.7.7)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=1496 species="Bacteria; Firmicutes
DNA polymerase III polC-type n=138 Tax=Clostridium difficile RepID=Q18BG8_CLOD6 rbh
NECEvent2014_2_3_scaffold_200_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10187..12010)
DNA (1824bp) protein (608aa)
Acd {ECO:0000313|EMBL:AAV54288.1}; Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase {ECO:0000313|EMBL:CAJ68161.1}; EC=3.2.1.96 {ECO:0000313|EMBL:CAJ68161.1};; TaxID=272563 species="Bacteria; Firm
acd; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (EC:3.2.1.96)
Mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein n=24 Tax=Clostridium difficile RepID=T3HV34_CLODC rbh
NECEvent2014_2_3_scaffold_200_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12225..12962
DNA (738bp) protein (246aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1215069 spe
NAD-dependent protein deacetylase n=211 Tax=Clostridium difficile RepID=C9XP33_CLODC rbh
NAD-dependent deacetylase
NECEvent2014_2_3_scaffold_200_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13082..13402
DNA (321bp) protein (107aa)
MazG nucleotide pyrophosphohydrolase domain protein n=213 Tax=Clostridium difficile RepID=C9XP32_CLODC
pyrophosphohydrolase
Putative MazG-like pyrophosphohydrolase {ECO:0000313|EMBL:CCL29374.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
NECEvent2014_2_3_scaffold_200_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13577..13717)
DNA (141bp) protein (47aa)
Uncharacterized protein n=217 Tax=Clostridium difficile RepID=C9XP31_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL01262.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_200_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13986..14654
DNA (669bp) protein (223aa)
Integral membrane family protein n=67 Tax=Clostridium difficile RepID=T2U2T9_CLODI rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ68157.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_200_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14745..16196)
DNA (1452bp) protein (484aa)
pepA; Leucine aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase n=36 Tax=Clostridium difficile RepID=Q18BF9_CLOD6 rbh
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=1496 species
NECEvent2014_2_3_scaffold_200_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16212..16652)
DNA (441bp) protein (147aa)
MarR family protein n=198 Tax=Clostridium difficile RepID=C9XP28_CLODC
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCL29370.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_200_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16900..17328)
DNA (429bp) protein (143aa)
Sporulation protein YtfJ n=219 Tax=Clostridium difficile RepID=T3HPD4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21398.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_200_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17282..17911)
DNA (630bp) protein (210aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=Q18BG2_CLOD6 rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21397.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_200_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18073..18612)
DNA (540bp) protein (180aa)
Segregation and condensation protein B n=173 Tax=Clostridium difficile RepID=SCPB_CLOD6 rbh
scpB; segregation and condensation protein B
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
NECEvent2014_2_3_scaffold_200_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18614..19333)
DNA (720bp) protein (240aa)
Segregation and condensation protein A n=83 Tax=Clostridium difficile RepID=Q18BF7_CLOD6 rbh
scpA; Segregation and condensation protein A
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pep
NECEvent2014_2_3_scaffold_200_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19363..19959)
DNA (597bp) protein (199aa)
Peptidase M50 family protein n=98 Tax=Clostridium difficile RepID=T3HVK7_CLODC rbh
putative membrane-associated peptidase, M25family
Membrane-associated peptidase {ECO:0000313|EMBL:CKG99627.1}; Putative membrane-associated peptidase, M25family {ECO:0000313|EMBL:CEJ97873.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clos
NECEvent2014_2_3_scaffold_200_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20257..21093
DNA (837bp) protein (279aa)
AraC-family transcriptional regulator n=114 Tax=Clostridium difficile RepID=C9XP22_CLODC rbh
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CCL29364.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_200_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21114..21536
DNA (423bp) protein (141aa)
Uncharacterized protein n=107 Tax=Clostridium difficile RepID=C9XP21_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21392.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_200_23
unknown

Not on your lists

comp(21598..21735)
DNA (138bp) protein (46aa)

This feature has no annotations

NECEvent2014_2_3_scaffold_200_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21747..22910)
DNA (1164bp) protein (388aa)
D-alanyl-D-alanine carboxypeptidase (Penicillin-binding protein) n=137 Tax=Clostridium difficile RepID=C9XP20_CLODC rbh
dacF; D-alanyl-D-alanine carboxypeptidase
D-alanyl-D-alanine carboxypeptidase family protein {ECO:0000313|EMBL:EQG77560.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sou
NECEvent2014_2_3_scaffold_200_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22964..23164)
DNA (201bp) protein (67aa)
Uncharacterized protein n=198 Tax=Clostridium difficile RepID=G6B7M4_CLODI
small acid-soluble spore protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ30507.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_200_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23371..25113)
DNA (1743bp) protein (581aa)
Ribonuclease J family protein n=10 Tax=Clostridium difficile RepID=U3UIR1_CLODI rbh
Ribonuclease J family protein {ECO:0000313|EMBL:CCL29360.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
metallo-beta-lactamase
NECEvent2014_2_3_scaffold_200_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25264..26001
DNA (738bp) protein (246aa)
Uncharacterized protein n=193 Tax=Clostridium difficile RepID=T2U3E9_CLODI rbh
membrane-bound metal-dependent hydrolase
Putative membrane-bound metal-dependent hydrolase {ECO:0000313|EMBL:EHJ30509.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sourc
NECEvent2014_2_3_scaffold_200_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26118..26576)
DNA (459bp) protein (153aa)
Ferric uptake regulation protein n=218 Tax=Clostridium difficile RepID=C9XP16_CLODC rbh
ferric uptake regulation protein
Transcriptional regulator, Fur family {ECO:0000313|EMBL:CCL01208.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
NECEvent2014_2_3_scaffold_200_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26858..27199)
DNA (342bp) protein (114aa)
UPF0473 protein HMPREF1122_01904 n=4 Tax=Clostridium difficile RepID=G6B7M8_CLODI
UPF0473 protein BN1095_340009 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
hypothetical protein
Displaying 29 items

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