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NECEvent2014_2_3_scaffold_205

Alias: 172_003_scaffold_205

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_205_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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613..2475
DNA (1863bp) protein (621aa)
bglF; PTS system, beta-glucoside-specific IIABCcomponent (EC:2.7.1.69)
PTS system, beta-glucoside-specific IIABC component {ECO:0000313|EMBL:CAJ67209.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CAJ67209.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
PTS system, beta-glucoside-specific IIABC component n=4 Tax=Clostridium difficile RepID=Q18DC5_CLOD6 rbh
NECEvent2014_2_3_scaffold_205_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2478..3980
DNA (1503bp) protein (501aa)
bglA; 6-phospho-beta-glucosidase (EC:3.2.1.86)
6-phospho-beta-glucosidase {ECO:0000313|EMBL:CKH72673.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CKH72673.1};; 6-phospho-beta-glucosidase, bglA {ECO:0000313|EMBL:CEJ96906.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CEJ9
6-phospho-beta-glucosidase n=37 Tax=Clostridium difficile RepID=Q18DC7_CLOD6 rbh
NECEvent2014_2_3_scaffold_205_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3968..4804
DNA (837bp) protein (279aa)
Transcription antiterminator, PTS operon regulator n=55 Tax=Clostridium difficile RepID=Q18DC6_CLOD6 rbh
bglG; Transcription antiterminator, PTS operonregulator
Beta-glucoside bgl operon transcription antiterminator {ECO:0000313|EMBL:CKH72639.1}; Transcription antiterminator, PTS operonregulator {ECO:0000313|EMBL:CEJ96907.1}; TaxID=1496 species="Bacteria; Fir
NECEvent2014_2_3_scaffold_205_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5185..5454
DNA (270bp) protein (90aa)
Uncharacterized protein n=57 Tax=Clostridium difficile RepID=F3Y626_CLOD6
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH72607.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ96908.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
NECEvent2014_2_3_scaffold_205_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5432..6970
DNA (1539bp) protein (513aa)
asnB; Asparagine synthetase [glutamine-hydrolyzing] (EC:6.3.5.4)
Asparagine synthetase {ECO:0000313|EMBL:CKH72576.1}; EC=6.3.5.4 {ECO:0000313|EMBL:CKH72576.1};; Asparagine synthetase [glutamine-hydrolyzing] {ECO:0000313|EMBL:CEJ96909.1}; EC=6.3.5.4 {ECO:0000313|EMB
Asparagine synthetase n=22 Tax=Clostridium difficile RepID=Q188I0_CLOD6 rbh
NECEvent2014_2_3_scaffold_205_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7049..7645)
DNA (597bp) protein (199aa)
Radical SAM , TatD family-associated domain protein n=14 Tax=Clostridium difficile RepID=T3IJ90_CLODC rbh
radical SAM-family protein
Putative radical SAM-family protein {ECO:0000313|EMBL:CEJ96910.1}; Radical SAM protein {ECO:0000313|EMBL:CKH72551.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoc
NECEvent2014_2_3_scaffold_205_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7672..8190)
DNA (519bp) protein (173aa)
ECF-type riboflavin transporter, S component family protein n=210 Tax=Clostridium difficile RepID=T3IKE8_CLODC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ31924.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_205_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8561..9559)
DNA (999bp) protein (333aa)
D-lactate dehydrogenase {ECO:0000313|EMBL:CCL23291.1}; EC=1.1.1.28 {ECO:0000313|EMBL:CCL23291.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoc
(R)-2-hydroxyisocaproate dehydrogenase n=203 Tax=Clostridium difficile RepID=C9XK81_CLODC rbh
D-lactate dehydrogenase
NECEvent2014_2_3_scaffold_205_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10236..11435
DNA (1200bp) protein (400aa)
Isocaprenoyl-CoA:2-hydroxyisocaproate CoA-transferase {ECO:0000313|EMBL:CDS83470.1}; EC=2.8.3.- {ECO:0000313|EMBL:CDS83470.1};; EC=2.8.3.16 {ECO:0000313|EMBL:CKH72461.1};; Isocaprenoyl-CoA:2-hydroxyis
CoA-transferase III family protein n=210 Tax=Clostridium difficile RepID=C9XK82_CLODC rbh
isocaprenoyl-CoA:2-hydroxyisocaproate CoA-transferase
NECEvent2014_2_3_scaffold_205_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11474..12274
DNA (801bp) protein (267aa)
Activator of 2-hydroxyisocaproyl-CoA dehydratase n=214 Tax=Clostridium difficile RepID=C9XK83_CLODC rbh
hadI; activator of 2-hydroxyisocaproyl-CoA dehydratase
Activator of 2-hydroxyisocaproyl-CoA dehydratase {ECO:0000313|EMBL:CCL00064.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sourc
NECEvent2014_2_3_scaffold_205_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12289..13515
DNA (1227bp) protein (409aa)
Subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase n=209 Tax=Clostridium difficile RepID=C9XK84_CLODC rbh
hadB; subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase
R-phenyllactate dehydratase, medium subunit {ECO:0000313|EMBL:EHJ34276.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pep
NECEvent2014_2_3_scaffold_205_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13515..14642
DNA (1128bp) protein (376aa)
2-hydroxyglutaryl-CoA dehydratase, D-component family protein n=193 Tax=Clostridium difficile RepID=T3IKD5_CLODC rbh
hadC; subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase C
Subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase C {ECO:0000313|EMBL:CCL23295.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclo
NECEvent2014_2_3_scaffold_205_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14690..15823
DNA (1134bp) protein (378aa)
Acyl-CoA dehydrogenase, N-terminal domain protein n=188 Tax=Clostridium difficile RepID=C9XK86_CLODC rbh
acdB; acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase, N-terminal domain protein {ECO:0000313|EMBL:EQG78046.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sour
NECEvent2014_2_3_scaffold_205_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15856..16641
DNA (786bp) protein (262aa)
Electron transfer flavodomain protein n=195 Tax=Clostridium difficile RepID=C9XK87_CLODC rbh
etfB1; electron transfer flavoprotein subunit beta
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:EHJ31916.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pep
NECEvent2014_2_3_scaffold_205_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16660..17697
DNA (1038bp) protein (346aa)
Electron transfer flavoFAD-binding domain protein n=214 Tax=Clostridium difficile RepID=C9XK88_CLODC rbh
etfA1; electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein FAD-binding domain protein {ECO:0000313|EMBL:EFH08774.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.
NECEvent2014_2_3_scaffold_205_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18180..19811
DNA (1632bp) protein (544aa)
Sensory box protein n=185 Tax=Clostridium difficile RepID=C9XK89_CLODC rbh
Transcriptional regulator, sigma-54-dependent {ECO:0000313|EMBL:CCL31432.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="
sigma-54-dependent transcriptional regulator
NECEvent2014_2_3_scaffold_205_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19946..20872)
DNA (927bp) protein (309aa)
fba; Fructose-1,6-bisphosphate aldolase (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase {ECO:0000313|EMBL:CEJ96921.1}; EC=4.1.2.13 {ECO:0000313|EMBL:CEJ96921.1};; Putative fructose-bisphosphate aldolase {ECO:0000313|EMBL:CKH72147.1}; EC=4.1.2.13 {ECO:00
Fructose-1,6-bisphosphate aldolase, class II n=26 Tax=Clostridium difficile RepID=T3IDZ7_CLODC rbh
NECEvent2014_2_3_scaffold_205_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21202..21531
DNA (330bp) protein (110aa)
Uncharacterized protein n=134 Tax=Clostridium difficile RepID=T3IJ49_CLODC
conserved hypothetical protein, DUF1904 family
Uncharacterized protein {ECO:0000313|EMBL:CAJ67225.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_205_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21531..22253
DNA (723bp) protein (241aa)
rluA; Ribosomal small subunit pseudouridine synthaseA (EC:4.2.1.70)
Ribosomal small subunit pseudouridine synthase A {ECO:0000313|EMBL:CAJ67226.1}; EC=4.2.1.70 {ECO:0000313|EMBL:CAJ67226.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pepto
Pseudouridine synthase n=5 Tax=Clostridium difficile RepID=T3IKA2_CLODC rbh
NECEvent2014_2_3_scaffold_205_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22277..23632
DNA (1356bp) protein (452aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=34 Tax=Clostridium difficile RepID=T3IH00_CLODC rbh
tRNA (Uracil-5-)-methyltransferase
Putative tRNA (Uracil-5-)-methyltransferase {ECO:0000313|EMBL:CBE02120.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pep
NECEvent2014_2_3_scaffold_205_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23956..24120
DNA (165bp) protein (55aa)
Uncharacterized protein n=34 Tax=Clostridium difficile RepID=T3IFC4_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ96961.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficil
NECEvent2014_2_3_scaffold_205_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24155..25189
DNA (1035bp) protein (345aa)
Uncharacterized protein n=26 Tax=Clostridium difficile RepID=T3IE00_CLODC rbh
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH71126.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ96962.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
NECEvent2014_2_3_scaffold_205_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25276..25479
DNA (204bp) protein (68aa)
Uncharacterized protein n=184 Tax=Clostridium difficile RepID=C9XK96_CLODC
hypothetical protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:CKH71101.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ96963.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrepto
NECEvent2014_2_3_scaffold_205_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25650..26810
DNA (1161bp) protein (387aa)
Cell surface protein {ECO:0000313|EMBL:CKH71064.1}; EC=3.5.1.28 {ECO:0000313|EMBL:CKH71064.1};; Cwp27 {ECO:0000313|EMBL:AFV73938.1}; Putative cell wall binding protein cwp27 {ECO:0000313|EMBL:CEJ96964
Cell wall binding repeat 2 family protein n=27 Tax=Clostridium difficile RepID=T3IFA7_CLODC rbh
cwp27; putative cell wall binding protein cwp27
Displaying 24 items

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