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NECEvent2014_2_3_scaffold_258

Alias: 172_003_scaffold_258

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_258_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(136..4263)
DNA (4128bp) protein (1376aa)
Conserved repeat domain protein n=14 Tax=Clostridium difficile RepID=T2X7I9_CLODI rbh
conserved repeat protein
Conserved repeat protein {ECO:0000313|EMBL:CEJ98452.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffici
NECEvent2014_2_3_scaffold_258_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5065..5373
DNA (309bp) protein (103aa)
Uncharacterized protein n=10 Tax=Clostridium difficile RepID=Q187F3_CLOD6
hypothetical protein
Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein {ECO:0000313|EMBL:CKH14242.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98451.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; C
NECEvent2014_2_3_scaffold_258_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5322..6068)
DNA (747bp) protein (249aa)
Uncharacterized protein n=124 Tax=Clostridium difficile RepID=Q187F2_CLOD6 rbh
conserved hypothetical protein, DUF218 family
Uncharacterized protein {ECO:0000313|EMBL:CAJ68713.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_258_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6086..9523)
DNA (3438bp) protein (1146aa)
Diguanylate cyclase domain protein n=76 Tax=Clostridium difficile RepID=T3GN05_CLODC rbh
Two-component sensor histidine kinase
Two-component sensor histidine kinase {ECO:0000313|EMBL:CAJ68712.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclos
NECEvent2014_2_3_scaffold_258_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9556..11037)
DNA (1482bp) protein (494aa)
Diguanylate cyclase domain protein n=101 Tax=Clostridium difficile RepID=T3GPK7_CLODC rbh
Two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CEJ98448.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_258_6
unknown

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comp(11169..11279)
DNA (111bp) protein (37aa)

This feature has no annotations

NECEvent2014_2_3_scaffold_258_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11305..12144)
DNA (840bp) protein (280aa)
Prephenate dehydrogenase n=175 Tax=Clostridium difficile RepID=Q187E8_CLOD6 rbh
prephenate dehydrogenase
Prephenate dehydrogenase family protein {ECO:0000313|EMBL:EQH99523.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
NECEvent2014_2_3_scaffold_258_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12165..12698)
DNA (534bp) protein (178aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia
Shikimate kinase n=138 Tax=Clostridium difficile RepID=C9XT74_CLODC rbh
shikimate kinase
NECEvent2014_2_3_scaffold_258_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12710..13519)
DNA (810bp) protein (270aa)
aroE1; shikimate dehydrogenase 1 (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
Shikimate dehydrogenase n=129 Tax=Clostridium difficile RepID=T3GLV1_CLODC rbh
NECEvent2014_2_3_scaffold_258_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13566..14762)
DNA (1197bp) protein (399aa)
pheA; Bifunctional P-protein, chorismatemutase/prephenate dehydratase (EC:4.2.1.51 5.4.99.5)
Bifunctional P-protein, chorismatemutase/prephenate dehydratase {ECO:0000313|EMBL:CEJ98444.1}; EC=4.2.1.51 {ECO:0000313|EMBL:CEJ98444.1};; EC=5.4.99.5 {ECO:0000313|EMBL:CEJ98444.1};; Bifunctional chor
Chorismate mutase n=28 Tax=Clostridium difficile RepID=T3GLV7_CLODC rbh
NECEvent2014_2_3_scaffold_258_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14765..15844)
DNA (1080bp) protein (360aa)
aroC; Chorismate synthase(5-enolpyruvylshikimate-3-phosphate phospholyase) (EC:4.2.3.5)
Chorismate synthase (5-enolpyruvylshikimate-3-phosphate phospholyase) {ECO:0000313|EMBL:CAJ68706.1}; EC=4.2.3.5 {ECO:0000313|EMBL:CAJ68706.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia;
Chorismate synthase n=34 Tax=Clostridium difficile RepID=T3GN08_CLODC rbh
NECEvent2014_2_3_scaffold_258_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15822..17135)
DNA (1314bp) protein (438aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase n=40 Tax=Clostridium difficile RepID=AROA_CLOD6 rbh
NECEvent2014_2_3_scaffold_258_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17135..18199)
DNA (1065bp) protein (355aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostri
3-dehydroquinate synthase n=169 Tax=Clostridium difficile RepID=C9XT69_CLODC rbh
aroB; 3-dehydroquinate synthase
NECEvent2014_2_3_scaffold_258_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18221..19234)
DNA (1014bp) protein (338aa)
aroF; 3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:CKH13979.1}; EC=2.5.1.54 {ECO:0000313|EMBL:CKH13979.1};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000313|EMBL:CDS87747.1}; EC=
Phospho-2-dehydro-3-deoxyheptonate aldolase n=192 Tax=Clostridium difficile RepID=T3GQ48_CLODC rbh
Displaying 14 items

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