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NECEvent2014_2_3_scaffold_314

Alias: 172_003_scaffold_314

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_314_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18..1211
DNA (1194bp) protein (398aa)
Elongation factor Tu n=329 Tax=Clostridium difficile RepID=EFTU_CLOD6 rbh
elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostrid
NECEvent2014_2_3_scaffold_314_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1428..1577
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=199 Tax=Clostridium difficile RepID=RL33_CLOD6
rpmG; 50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_314_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1603..1824
DNA (222bp) protein (74aa)
Protein translocase subunit SecE n=189 Tax=Clostridium difficile RepID=C9XIH6_CLODC
preprotein translocase SecE subunit
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostri
NECEvent2014_2_3_scaffold_314_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1844..2386
DNA (543bp) protein (181aa)
Transcription termination/antitermination protein NusG n=194 Tax=Clostridium difficile RepID=Q18CE6_CLOD6 rbh
nusG; transcription antitermination protein
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptost
NECEvent2014_2_3_scaffold_314_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2425..2850
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=199 Tax=Clostridium difficile RepID=RL11_CLOD6
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_314_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2921..3619
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=183 Tax=Clostridium difficile RepID=RL1_CLOD6 rbh
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_314_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3842..4348
DNA (507bp) protein (169aa)
50S ribosomal protein L10 n=199 Tax=Clostridium difficile RepID=RL10_CLOD6 rbh
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridi
NECEvent2014_2_3_scaffold_314_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4406..4771
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=199 Tax=Clostridium difficile RepID=RL7_CLOD6
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
NECEvent2014_2_3_scaffold_314_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5163..5951
DNA (789bp) protein (263aa)
putative NADP-dependent deshydrogenase (EC:1.1.1.-)
NADP-dependent 7-alpha-hydroxysteroid dehydrogenase {ECO:0000313|EMBL:CKH93553.1}; EC=1.1.1.- {ECO:0000313|EMBL:CKH93553.1};; Putative NADP-dependent deshydrogenase {ECO:0000313|EMBL:CEJ96569.1}; EC=1
NADP-dependent 7-alpha-hydroxysteroid dehydrogenase n=9 Tax=Clostridium difficile RepID=T3IP51_CLODC rbh
NECEvent2014_2_3_scaffold_314_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6422..10138
DNA (3717bp) protein (1239aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=167 Tax=Clostridium difficile RepID=RPOB_CLOD6 rbh
NECEvent2014_2_3_scaffold_314_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10180..13665
DNA (3486bp) protein (1162aa)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=136 Tax=Clostridium difficile RepID=RPOC_CLOD6 rbh
NECEvent2014_2_3_scaffold_314_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13951..14376
DNA (426bp) protein (142aa)
30S ribosomal protein S12 n=183 Tax=Clostridium difficile RepID=C9XII5_CLODC
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridi
rpsL; 30S ribosomal protein S12
NECEvent2014_2_3_scaffold_314_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14500..14970
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=190 Tax=Clostridium difficile RepID=RS7_CLOD6 rbh
rpsG; 30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium d
NECEvent2014_2_3_scaffold_314_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15019..17085
DNA (2067bp) protein (689aa)
Elongation factor G n=160 Tax=Clostridium difficile RepID=EFG_CLOD6 rbh
Elongation factor G {ECO:0000255|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000255|HAMAP-Rule:MF_00054};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pept
fusA; Elongation factor G (EF-G)
NECEvent2014_2_3_scaffold_314_15
Scardovia inopinata, Scardovia, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17178..17258
DNA (81bp) protein (27aa)
Putative ATPase Tn916-like, CTn1-Orf19 n=1 Tax=Clostridium difficile (strain 630) RepID=Q18DB0_CLOD6
elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=641146 species="Bacteria; Actinobacteria; Bifidobacteriales
Displaying 15 items

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