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NECEvent2014_2_3_scaffold_34_85

Organism: NECEvent2014_2_3_Peptoclostridium_difficile_28_21

near complete RP 49 / 55 BSCG 51 / 51 ASCG 13 / 38 MC: 2
Location: comp(79723..79983)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=214 Tax=Clostridium difficile RepID=HFQ_CLOD6 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 86.0
  • Bit_score: 165
  • Evalue 3.40e-38
HfQ protein similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 86.0
  • Bit_score: 165
  • Evalue 9.50e-39
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 86.0
  • Bit_score: 165
  • Evalue 4.70e-38

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Taxonomy

Peptoclostridium difficile → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 261
ATGAAAAATACAGTTTTAAATTTACAAGATTTGTTTTTAAATAATGCAAGGAAAGAAAGGATACCTGTTACTATATATTTAGTTAATGGAGTGCAAGTTAAAGGGCTTGTAAAGGGGTTTGATAGTTATATAATATTAATAGAAGGGGATAATAGACAACAAAACATGATTTATAAACATGCTGTATCAACTATACAACCTGGAAAGTATATTAATCTAACAAATCAAAACCAAAACAACAATAATAATAACAACAGATAG
PROTEIN sequence
Length: 87
MKNTVLNLQDLFLNNARKERIPVTIYLVNGVQVKGLVKGFDSYIILIEGDNRQQNMIYKHAVSTIQPGKYINLTNQNQNNNNNNNR*