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NECEvent2014_2_3_scaffold_71_57

Organism: NECEvent2014_2_3_Peptoclostridium_difficile_28_21

near complete RP 49 / 55 BSCG 51 / 51 ASCG 13 / 38 MC: 2
Location: comp(54390..54674)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=141 Tax=Clostridium difficile RepID=T3HSU8_CLODC similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 94.0
  • Bit_score: 183
  • Evalue 7.70e-44
FliA/WhiG family RNA polymerase sigma 28 subunit similarity KEGG
DB: KEGG
  • Identity: 98.9
  • Coverage: 94.0
  • Bit_score: 182
  • Evalue 6.30e-44
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium similarity UNIPROT
DB: UniProtKB
  • Identity: 98.9
  • Coverage: 94.0
  • Bit_score: 182
  • Evalue 3.10e-43

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Taxonomy

Peptoclostridium difficile → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 285
GTGTGTAATGAAATAAGTCTTTTAGATATACTTGGTACAGAGGCTAACTATGTTCTTGATGAAGTTGAACTAAAAGTTCAAGTTGGAAAACTTTACGAACAACTAAACAAAATTCTTACTCCTAGAGAAAGAGAAATTGTCCAGTTAAGATATGGGTTAACTCCTTATGGCTATAAGACACAAAGAGAAATTGCACAAAAACTCGATATATCAAGGTCATATGTATCTAGAATCGAAAAAAAAGCTCTTAAAAAACTAGAAAAAGAGCTTGTTCAAGAAAGTTAA
PROTEIN sequence
Length: 95
VCNEISLLDILGTEANYVLDEVELKVQVGKLYEQLNKILTPREREIVQLRYGLTPYGYKTQREIAQKLDISRSYVSRIEKKALKKLEKELVQES*