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NECEvent2014_2_3_scaffold_275

Alias: 172_003_scaffold_275

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_275_1
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(127..417)
DNA (291bp) protein (97aa)
Uncharacterized protein n=4 Tax=Finegoldia magna RepID=B0S072_FINM2
hypothetical protein
Veg {ECO:0000313|EMBL:EXF27154.1}; TaxID=1459804 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna ALB8.;"
NECEvent2014_2_3_scaffold_275_2
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(488..1855)
DNA (1368bp) protein (456aa)
Magnesium transporter n=2 Tax=Finegoldia magna RepID=E1KYL9_FINMA rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=866779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna SY403409CC00
Mg2 transporter
NECEvent2014_2_3_scaffold_275_3
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1977..2165
DNA (189bp) protein (63aa)
Hydrid cluster protein-associated redox disulfide domain protein n=3 Tax=Finegoldia magna RepID=D9PSZ3_FINMA
Disulfide oxidoreductase {ECO:0000313|EMBL:EXF27156.1}; TaxID=1459804 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna ALB8.;"
disulfide oxidoreductase
NECEvent2014_2_3_scaffold_275_4
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2240..2470)
DNA (231bp) protein (77aa)
Glutaredoxin n=4 Tax=Finegoldia magna RepID=B0S070_FINM2
glutaredoxin
YruB family protein {ECO:0000313|EMBL:EGS33989.1}; TaxID=866779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna SY403409CC001050417.;
NECEvent2014_2_3_scaffold_275_5
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2523..3332)
DNA (810bp) protein (270aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rR
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Finegoldia magna SY403409CC001050417 RepID=F9N0E1_FINMA rbh
dimethyladenosine transferase
NECEvent2014_2_3_scaffold_275_6
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3278..3895)
DNA (618bp) protein (206aa)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rul
Ribonuclease M5 n=4 Tax=Finegoldia magna RepID=B0S068_FINM2 rbh
primase-like protein
NECEvent2014_2_3_scaffold_275_7
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3899..4666)
DNA (768bp) protein (256aa)
Hydrolase, TatD family n=1 Tax=Finegoldia magna SY403409CC001050417 RepID=F9N0E3_FINMA rbh
Hydrolase TatD {ECO:0000313|EMBL:EXF27160.1}; TaxID=1459804 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna ALB8.;"
TatD family deoxyribonuclease
NECEvent2014_2_3_scaffold_275_8
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4666..6666)
DNA (2001bp) protein (667aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:
Methionine--tRNA ligase n=1 Tax=Finegoldia magna (strain ATCC 29328) RepID=B0S066_FINM2 rbh
methionyl-tRNA synthetase
NECEvent2014_2_3_scaffold_275_9
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7059..7430)
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=1 Tax=Finegoldia magna SY403409CC001050417 RepID=F9N0E5_FINMA
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1459804 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna ALB8.;"
50S ribosomal protein L7/L12
NECEvent2014_2_3_scaffold_275_10
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7460..8002)
DNA (543bp) protein (181aa)
50S ribosomal protein L10 n=1 Tax=Finegoldia magna SY403409CC001050417 RepID=F9N0E6_FINMA rbh
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=866779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" sourc
50S ribosomal protein L10
NECEvent2014_2_3_scaffold_275_11
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8190..9335)
DNA (1146bp) protein (382aa)
Putative membrane protein n=1 Tax=Finegoldia magna SY403409CC001050417 RepID=F9N0E7_FINMA rbh
Putative membrane protein {ECO:0000313|EMBL:EGS33985.1}; TaxID=866779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna SY403409CC00105
putative permease
NECEvent2014_2_3_scaffold_275_12
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9393..10094)
DNA (702bp) protein (234aa)
50S ribosomal protein L1 n=4 Tax=Finegoldia magna RepID=RL1_FINM2 rbh
50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=866773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna BVS033A4.;"
NECEvent2014_2_3_scaffold_275_13
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10133..10558)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=5 Tax=Finegoldia magna RepID=RL11_FINM2
50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=866779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna SY403409CC0
NECEvent2014_2_3_scaffold_275_14
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10647..11228)
DNA (582bp) protein (194aa)
Transcription termination/antitermination protein NusG n=4 Tax=Finegoldia magna RepID=B0S060_FINM2 rbh
transcription antiterminator
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=334413 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptonip
NECEvent2014_2_3_scaffold_275_15
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11252..11470)
DNA (219bp) protein (73aa)
Protein translocase subunit SecE n=3 Tax=Finegoldia magna RepID=B0S056_FINM2
preprotein translocase SecE subunit
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=866779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna SY40
NECEvent2014_2_3_scaffold_275_16
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11480..11629)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=4 Tax=Finegoldia magna RepID=RL33_FINM2
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=768713 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna ACS-171-V-C
NECEvent2014_2_3_scaffold_275_17
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11706..12263)
DNA (558bp) protein (186aa)
Elongation factor P n=4 Tax=Finegoldia magna RepID=EFP_FINM2 rbh
translation elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1459804 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegold
NECEvent2014_2_3_scaffold_275_18
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12321..12809)
DNA (489bp) protein (163aa)
Molybdopterin biosynthesis protein n=3 Tax=Finegoldia magna RepID=B0S052_FINM2 rbh
molybdopterin biosynthesis protein
Molybdenum cofactor synthesis domain protein {ECO:0000313|EMBL:EGS34018.1}; TaxID=866779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia ma
NECEvent2014_2_3_scaffold_275_19
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12882..13229)
DNA (348bp) protein (116aa)
UPF0102 protein FMG_0533 n=4 Tax=Finegoldia magna RepID=B0S051_FINM2
putative endonuclease
UPF0102 protein BA93_00325 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1459804 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna ALB8.;"
NECEvent2014_2_3_scaffold_275_20
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13204..13827)
DNA (624bp) protein (208aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
Ribonuclease HII n=1 Tax=Finegoldia magna BVS033A4 RepID=E1KYN6_FINMA rbh
ribonuclease HII
NECEvent2014_2_3_scaffold_275_21
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13808..14671)
DNA (864bp) protein (288aa)
Ribosome biogenesis GTPase A n=1 Tax=Finegoldia magna BVS033A4 RepID=E1KYN7_FINMA rbh
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=866773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna BVS033A4.;
putative GTPase
NECEvent2014_2_3_scaffold_275_22
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14723..15070)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=5 Tax=Finegoldia magna RepID=RL19_FINM2
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=768713 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" sourc
NECEvent2014_2_3_scaffold_275_23
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15070..15771)
DNA (702bp) protein (234aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; EC=2.1.1.228 {ECO:0000255|HAMAP-Rule:MF_00605};; M1G-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltr
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Finegoldia magna (strain ATCC 29328) RepID=TRMD_FINM2 rbh
tRNA (guanine-N(1)-)-methyltransferase rbh
NECEvent2014_2_3_scaffold_275_24
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15759..16259)
DNA (501bp) protein (167aa)
Ribosome maturation factor RimM n=5 Tax=Finegoldia magna RepID=RIMM_FINM2 rbh
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1459804 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;
16S rRNA processing protein
NECEvent2014_2_3_scaffold_275_25
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16259..16489)
DNA (231bp) protein (77aa)
UPF0109 protein FMG_0527 n=5 Tax=Finegoldia magna RepID=B0S045_FINM2
hypothetical protein
UPF0109 protein HMPREF9489_1097 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=866779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna SY403
NECEvent2014_2_3_scaffold_275_26
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16511..16762)
DNA (252bp) protein (84aa)
30S ribosomal protein S16 n=5 Tax=Finegoldia magna RepID=RS16_FINM2
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1459804 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna ALB8.;"
NECEvent2014_2_3_scaffold_275_27
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16782..18122)
DNA (1341bp) protein (447aa)
Signal recognition particle protein n=4 Tax=Finegoldia magna RepID=B0S043_FINM2 rbh
signal recognition particle
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=768713 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pept
Displaying 27 items

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