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NECEvent2014_2_5_scaffold_39

Alias: 172_005_scaffold_39

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_5_scaffold_39_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..1441)
DNA (1440bp) protein (480aa)
RecF/RecN/SMC N terminal domain protein n=4 Tax=Clostridium difficile RepID=T2TZ41_CLODI rbh
putative DNA recombination proteinTn1549-like,CTn5-Orf24
Conjugative transposon DNA recombination protein {ECO:0000313|EMBL:CKH14828.1}; Putative DNA recombination proteinTn1549-like,CTn5-Orf24 {ECO:0000313|EMBL:CEK00077.1}; TaxID=1496 species="Bacteria; Fi
NECEvent2014_2_5_scaffold_39_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1644..1874)
DNA (231bp) protein (77aa)
Transcriptional regulator, HTH-type Tn1549-like,CTn5-Orf23 n=11 Tax=Firmicutes RepID=Q187H7_CLOD6
HTH-type transcriptional regulator
Transcriptional regulator, HTH-type Tn1549-like,CTn5-Orf23 {ECO:0000313|EMBL:CAJ68738.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium
NECEvent2014_2_5_scaffold_39_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2014..2673)
DNA (660bp) protein (220aa)
Putative single-strand DNA-binding protein Tn1549-like, CTn5-Orf22 n=4 Tax=Clostridium difficile RepID=Q187H5_CLOD6 rbh
putative single-strand DNA-binding proteinTn1549-like, CTn5-Orf22
Putative single-strand DNA-binding proteinTn1549-like, CTn5-Orf22 {ECO:0000313|EMBL:CEK00079.1}; Uncharacterised protein {ECO:0000313|EMBL:CKH14739.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostr
NECEvent2014_2_5_scaffold_39_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2716..11697)
DNA (8982bp) protein (2994aa)
Helicase conserved C-terminal domain protein n=19 Tax=Clostridium difficile RepID=T3S166_CLODI rbh
putative DNA/RNA helicaseTn1549-like,CTn5-Orf21
Putative DNA/RNA helicase Tn1549-like,CTn5-Orf21 {ECO:0000313|EMBL:CAJ68736.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source
NECEvent2014_2_5_scaffold_39_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11810..12616)
DNA (807bp) protein (269aa)
Leucine carboxyl methyltransferase family protein n=4 Tax=Clostridium difficile RepID=T2TZU2_CLODI rbh
putative conjugative transposon proteinTn1549-like, CTn5-Orf19
Polyketide methyltransferase {ECO:0000313|EMBL:CKH14689.1}; Putative conjugative transposon proteinTn1549-like, CTn5-Orf19 {ECO:0000313|EMBL:CEK00081.1}; TaxID=1496 species="Bacteria; Firmicutes; Clos
NECEvent2014_2_5_scaffold_39_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12727..13773)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=32 Tax=Clostridium difficile RepID=G6B3W3_CLODI rbh
putative conjugative transposon protein DUF1016family, Tn1549-like, CTn5-Orf18
Uncharacterized protein {ECO:0000313|EMBL:EHJ33495.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_5_scaffold_39_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13807..13992)
DNA (186bp) protein (62aa)
Transcriptional regulator, AbrB family Tn1549-like, CTn5-Orf17 n=32 Tax=Clostridium difficile RepID=Q187H2_CLOD6
AbrB family transcriptional regulator
AbrB family transcriptional regulator {ECO:0000313|EMBL:CKH14636.1}; Transcriptional regulator, AbrB familyTn1549-like, CTn5-Orf17 {ECO:0000313|EMBL:CEK00083.1}; TaxID=1496 species="Bacteria; Firmicut
NECEvent2014_2_5_scaffold_39_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14076..15782)
DNA (1707bp) protein (569aa)
DNA topoisomerase n=4 Tax=Clostridium difficile RepID=Q187G8_CLOD6 rbh
DNA topoisomerase protein, type IA,Tn1549-like,CTn5-Orf16 {ECO:0000313|EMBL:CAJ68732.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.
type IA DNA topoisomerase
NECEvent2014_2_5_scaffold_39_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15878..17458)
DNA (1581bp) protein (527aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T2U213_CLODI rbh
Cell surface protein {ECO:0000313|EMBL:CKH14592.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (
cell surface protein
NECEvent2014_2_5_scaffold_39_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17439..17672)
DNA (234bp) protein (78aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T2TZT9_CLODI
putative conjugative transposon proteinTn1549-like, CTn5-Orf14
Putative conjugative transposon protein Tn1549-like, CTn5-Orf14 {ECO:0000313|EMBL:CAJ68730.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
NECEvent2014_2_5_scaffold_39_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17684..19846)
DNA (2163bp) protein (721aa)
NLP/P60 protein {ECO:0000313|EMBL:CKH14543.1}; EC=3.4.-.- {ECO:0000313|EMBL:CKH14543.1};; Putative cell wall hydrolaseTn1549-like,CTn5-Orf13 {ECO:0000313|EMBL:CEK00087.1}; TaxID=1496 species="Bacteria
Bacteriophage peptidoglycan hydrolase family protein n=4 Tax=Clostridium difficile RepID=T2TZ32_CLODI rbh
putative cell wall hydrolaseTn1549-like,CTn5-Orf13
NECEvent2014_2_5_scaffold_39_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19851..22280)
DNA (2430bp) protein (810aa)
Type IV secretion-system coupling DNA-binding domain protein n=3 Tax=Clostridium difficile RepID=T2TZM5_CLODI rbh
putative hydrolase Tn1549-like, CTn5-Orf12
Putative hydrolase Tn1549-like, CTn5-Orf12 {ECO:0000313|EMBL:CAJ68728.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_5_scaffold_39_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22585..22845)
DNA (261bp) protein (87aa)
Putative conjugative transposon protein Tn1549-like, CTn5-Orf10 n=4 Tax=Clostridium difficile RepID=Q187G4_CLOD6
putative conjugative transposon proteinTn1549-like, CTn5-Orf10
Putative conjugative transposon protein Tn1549-like, CTn5-Orf10 {ECO:0000313|EMBL:CAJ68726.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
NECEvent2014_2_5_scaffold_39_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22863..23726)
DNA (864bp) protein (288aa)
Uncharacterized protein n=16 Tax=Clostridium difficile RepID=G6B3V4_CLODI rbh
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ33486.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_5_scaffold_39_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23746..23961)
DNA (216bp) protein (72aa)
Maff2 family protein n=21 Tax=Clostridium difficile RepID=T2TZT4_CLODI
putative conjugative transposon proteinTn1549-like, CTn5-Orf8
Putative conjugative transposon protein Tn1549-like, CTn5-Orf8 {ECO:0000313|EMBL:CAJ68724.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostri
NECEvent2014_2_5_scaffold_39_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23965..24276)
DNA (312bp) protein (104aa)
Uncharacterized protein n=30 Tax=Clostridium difficile RepID=G6B3V2_CLODI
putative single-strand DNA-binding proteinTn1549-like, CTn5-Orf7
Conjugal transfer protein {ECO:0000313|EMBL:CKH14420.1}; Putative single-strand DNA-binding proteinTn1549-like, CTn5-Orf7 {ECO:0000313|EMBL:CEK00093.1}; TaxID=1496 species="Bacteria; Firmicutes; Clost
NECEvent2014_2_5_scaffold_39_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24485..25351)
DNA (867bp) protein (289aa)
Transcriptional regulator, AraC family Tn1549-like, CTn5-Orf6 n=38 Tax=Clostridium difficile RepID=Q187G0_CLOD6 rbh
AraC family transcriptional regulator
Transcriptional regulator, AraC family Tn1549-like, CTn5-Orf6 {ECO:0000313|EMBL:CAJ68722.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_5_scaffold_39_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25515..27296)
DNA (1782bp) protein (594aa)
TraG/TraD family protein n=24 Tax=Clostridium difficile RepID=G6B3U9_CLODI rbh
TRAG family protein {ECO:0000313|EMBL:CKH14388.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (C
putative conjugative transfer proteinTn1549-like, CTn5-Orf5
NECEvent2014_2_5_scaffold_39_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27293..27778)
DNA (486bp) protein (162aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T2U206_CLODI rbh
putative conjugative transposon proteinTn1549-like, CTn5-Orf4
Putative ATPase of the AAA superfamily {ECO:0000313|EMBL:CKH14367.1}; Putative conjugative transposon proteinTn1549-like, CTn5-Orf4 {ECO:0000313|EMBL:CEK00096.1}; TaxID=1496 species="Bacteria; Firmicu
NECEvent2014_2_5_scaffold_39_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27780..28790)
DNA (1011bp) protein (337aa)
Putative conjugative transposon protein Tn1549-like, CTn5-Orf3 n=4 Tax=Clostridium difficile RepID=Q187F9_CLOD6 rbh
putative conjugative transposon proteinTn1549-like, CTn5-Orf3
Conjugative transposon protein {ECO:0000313|EMBL:CKH14341.1}; Putative conjugative transposon proteinTn1549-like, CTn5-Orf3 {ECO:0000313|EMBL:CEK00097.1}; TaxID=1496 species="Bacteria; Firmicutes; Clo
NECEvent2014_2_5_scaffold_39_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28891..29034)
DNA (144bp) protein (48aa)
Uncharacterized protein n=27 Tax=Clostridium difficile RepID=G6B3U6_CLODI
conjugative transposon protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ33478.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
Displaying 21 items

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