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NECEvent2014_2_5_scaffold_41

Alias: 172_005_scaffold_41

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_5_scaffold_41_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

252..455
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4P657_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ63174.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_5_scaffold_41_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

542..1516
DNA (975bp) protein (325aa)
Helix-turn-helix domain protein n=7 Tax=Clostridium difficile RepID=T2U2E2_CLODI rbh
putative conjugative transposon proteinTn1549-like, CTn4-Orf1
Putative conjugative transposon protein Tn1549-like, CTn4-Orf1 {ECO:0000313|EMBL:CAJ67968.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostri
NECEvent2014_2_5_scaffold_41_3
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1537..1755
DNA (219bp) protein (73aa)
Uncharacterized protein n=10 Tax=root RepID=A7VRN3_9CLOT
conjugative transposon protein
Uncharacterized protein {ECO:0000313|EMBL:EGX68191.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_
NECEvent2014_2_5_scaffold_41_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1838..2314
DNA (477bp) protein (159aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T2U1L6_CLODI rbh
putative conjugative transposon proteinTn1549-like, CTn4-Orf3
Putative ATPase of the AAA superfamily {ECO:0000313|EMBL:CKG94077.1}; Putative conjugative transposon proteinTn1549-like, CTn4-Orf3 {ECO:0000313|EMBL:CEJ97684.1}; TaxID=1496 species="Bacteria; Firmicu
NECEvent2014_2_5_scaffold_41_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2311..4098
DNA (1788bp) protein (596aa)
Type IV secretory system Conjugative DNA transfer family protein n=4 Tax=Clostridium difficile RepID=T2U2C6_CLODI rbh
Putative conjugative transfer proteinTn1549-like, CTn4-Orf4 {ECO:0000313|EMBL:CEJ97683.1}; TRAG family protein {ECO:0000313|EMBL:CKG94051.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clos
conjugative transfer protein
100% identity to conjugal transfer protein TraG from Peptoclostridium difficile Jill Banfield (7/8/14)
NECEvent2014_2_5_scaffold_41_6
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4091..4258
DNA (168bp) protein (56aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=U3W6F9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EGX68188.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_
hypothetical protein
NECEvent2014_2_5_scaffold_41_7
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4458..4673
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=root RepID=A7VRM9_9CLOT
conjugative transposon protein
Uncharacterized protein {ECO:0000313|EMBL:EDO61709.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753
NECEvent2014_2_5_scaffold_41_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4690..5559
DNA (870bp) protein (290aa)
Uncharacterized protein n=9 Tax=Firmicutes RepID=N9WL36_CLOIN rbh
membrane protein
Putative membrane protein Tn1549-like,CTn4-Orf7 {ECO:0000313|EMBL:CEJ97680.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="P
NECEvent2014_2_5_scaffold_41_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5581..5985
DNA (405bp) protein (135aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf8 n=1 Tax=Clostridium difficile (strain 630) RepID=Q18AX0_CLOD6
conjugative transposon protein
Putative conjugative transposon protein Tn1549-like, CTn4-Orf8 {ECO:0000313|EMBL:CAJ67961.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostri
NECEvent2014_2_5_scaffold_41_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5933..8362
DNA (2430bp) protein (810aa)
conjugal transfer protein TraE n=1 Tax=Clostridium difficile RepID=UPI00017F5FAE rbh
putative hydrolase Tn1549-like, CTn4-Orf9
Putative hydrolase Tn1549-like, CTn4-Orf9 {ECO:0000313|EMBL:CEJ97678.1}; TraE protein {ECO:0000313|EMBL:CKG93966.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptoco
NECEvent2014_2_5_scaffold_41_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8359..9318
DNA (960bp) protein (320aa)
DNA-methyltransferase (EC:2.1.1.113)
DNA-methyltransferase, cytosine-N4-specific Tn1549-like, CTn4-Orf10 {ECO:0000313|EMBL:CAJ67959.1}; EC=2.1.1.113 {ECO:0000313|EMBL:CAJ67959.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia;
DNA-methyltransferase, cytosine-N4-specific Tn1549-like, CTn4-Orf10 n=3 Tax=Clostridium difficile RepID=Q18AW5_CLOD6 rbh
NECEvent2014_2_5_scaffold_41_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9345..11285
DNA (1941bp) protein (647aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf11 n=1 Tax=Clostridium difficile (strain 630) RepID=Q18AW6_CLOD6 rbh
Putative conjugative transposon protein Tn1549-like, CTn4-Orf11 {ECO:0000313|EMBL:CAJ67958.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
putative conjugative transposon proteinTn1549-like, CTn4-Orf11
NECEvent2014_2_5_scaffold_41_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11317..11574
DNA (258bp) protein (86aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf12 n=2 Tax=Clostridium difficile RepID=Q18AW7_CLOD6
conjugative transposon protein
Putative conjugative transposon proteinTn1549-like, CTn4-Orf12 {ECO:0000313|EMBL:CEJ97675.1}; Uncharacterised protein {ECO:0000313|EMBL:CKG93890.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridi
NECEvent2014_2_5_scaffold_41_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11564..12292
DNA (729bp) protein (243aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T2U1J7_CLODI rbh
cell surface protein
Putative cell surface protein Tn1549-like,CTn4-Orf13 {ECO:0000313|EMBL:CAJ67956.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
NECEvent2014_2_5_scaffold_41_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12289..12477
DNA (189bp) protein (63aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf14 n=1 Tax=Clostridium difficile (strain 630) RepID=Q18AW0_CLOD6
putative conjugative transposon proteinTn1549-like, CTn4-Orf14
Putative conjugative transposon proteinTn1549-like, CTn4-Orf14 {ECO:0000313|EMBL:CEJ97673.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridi
NECEvent2014_2_5_scaffold_41_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12494..14584
DNA (2091bp) protein (697aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1496 species="Bacteria; Firmicutes;
topB; DNA topoisomerase III; Tn1549-like, CTn4-Orf15 (EC:5.99.1.2)
DNA topoisomerase n=3 Tax=Clostridium difficile RepID=T2U2A8_CLODI rbh
NECEvent2014_2_5_scaffold_41_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14717..18748
DNA (4032bp) protein (1344aa)
YodL-like family protein n=4 Tax=Clostridium difficile RepID=T2U2Y5_CLODI rbh
putative antirestriction proteinTn1549-like,CTn4-Orf16
Domain of uncharacterised function (DUF955)./Antirestriction protein (ArdA) {ECO:0000313|EMBL:CKG93809.1}; Putative antirestriction proteinTn1549-like,CTn4-Orf16 {ECO:0000313|EMBL:CEJ97671.1}; TaxID=1
100% ID to DNA primase in Peptoclostridium difficile Jill Banfield (7/8/14)
NECEvent2014_2_5_scaffold_41_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18751..18957
DNA (207bp) protein (69aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf17 n=2 Tax=Clostridium difficile RepID=Q18AW3_CLOD6
putative conjugative transposon proteinTn1549-like, CTn4-Orf17
Putative conjugative transposon protein Tn1549-like, CTn4-Orf17 {ECO:0000313|EMBL:CAJ67952.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
NECEvent2014_2_5_scaffold_41_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18954..19319
DNA (366bp) protein (122aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf18 n=1 Tax=Clostridium difficile (strain 630) RepID=Q18AW4_CLOD6
putative conjugative transposon proteinTn1549-like, CTn4-Orf18
Putative conjugative transposon proteinTn1549-like, CTn4-Orf18 {ECO:0000313|EMBL:CEJ97669.1}; Uncharacterised protein {ECO:0000313|EMBL:CKG93755.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridi
NECEvent2014_2_5_scaffold_41_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19497..19916)
DNA (420bp) protein (140aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf19 n=6 Tax=Clostridium difficile RepID=Q18AV4_CLOD6 rbh
putative conjugative transposon proteinTn1549-like, CTn4-Orf19
Putative conjugative transposon protein Tn1549-like, CTn4-Orf19 {ECO:0000313|EMBL:CAJ67950.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
NECEvent2014_2_5_scaffold_41_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20185..20295)
DNA (111bp) protein (37aa)
Putative membrane protein n=1 Tax=Clostridium difficile P28 RepID=T4P6D4_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQJ63157.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_5_scaffold_41_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20300..20530)
DNA (231bp) protein (77aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf21 n=2 Tax=Clostridium difficile RepID=Q18AV6_CLOD6
putative conjugative transposon proteinTn1549-like, CTn4-Orf21
Putative conjugative transposon protein Tn1549-like, CTn4-Orf21 {ECO:0000313|EMBL:CAJ67948.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostr
NECEvent2014_2_5_scaffold_41_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20623..21966)
DNA (1344bp) protein (448aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Clostridium difficile CD13 RepID=T2U2C3_CLODI rbh
endonuclease relaxase
Putative endonuclease relaxaseTn1549-like,CTn4-Orf22 {ECO:0000313|EMBL:CEJ97665.1}; Relaxase/Mobilisation nuclease domain {ECO:0000313|EMBL:CKG93675.1}; TaxID=1496 species="Bacteria; Firmicutes; Clost
Displaying 23 items

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