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NECEvent2014_3_1_scaffold_336

Alias: 173_005_scaffold_336

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_1_scaffold_336_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..360)
DNA (360bp) protein (120aa)
RNA polymerase sigma factor n=4 Tax=Clostridium butyricum RepID=B1QYS1_CLOBU
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1
sigG; RNA polymerase sigma-G factor SigG
NECEvent2014_3_1_scaffold_336_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(443..1150)
DNA (708bp) protein (236aa)
RNA polymerase sigma factor n=5 Tax=Clostridium butyricum RepID=B1QYS2_CLOBU rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;
sporulation sigma factor SigE
NECEvent2014_3_1_scaffold_336_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1164..1967)
DNA (804bp) protein (268aa)
Sporulation sigma-E factor-processing peptidase {ECO:0000256|PIRNR:PIRNR018571}; EC=3.4.23.- {ECO:0000256|PIRNR:PIRNR018571};; Membrane-associated aspartic protease {ECO:0000256|PIRNR:PIRNR018571}; St
Sigma-E processing peptidase SpoIIGA n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AT50_CLOBU rbh
peptidase U4, sporulation factor SpoIIGA
NECEvent2014_3_1_scaffold_336_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2438..3571)
DNA (1134bp) protein (378aa)
Cell division protein FtsZ n=4 Tax=Clostridium butyricum RepID=B1QYS4_CLOBU rbh
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sour
ftsZ; cell division protein FtsZ
NECEvent2014_3_1_scaffold_336_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3586..4851)
DNA (1266bp) protein (422aa)
Cell division protein FtsA n=2 Tax=Clostridium butyricum RepID=M8J904_CLOBU rbh
Cell division protein FtsA {ECO:0000313|EMBL:KJZ83084.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
actin-like ATPase involved in cell division
NECEvent2014_3_1_scaffold_336_6
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5089..6120)
DNA (1032bp) protein (344aa)
Twitching mobility protein n=2 Tax=Clostridium butyricum RepID=M8KCW2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83083.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
pilT; twitching mobility protein PilT
NECEvent2014_3_1_scaffold_336_7
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6291..6989)
DNA (699bp) protein (233aa)
RNA polymerase sigma factor n=4 Tax=Clostridium butyricum RepID=B1QYS7_CLOBU rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
sigK; RNA polymerase sigma-28 factor SigK
NECEvent2014_3_1_scaffold_336_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7062..8588)
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AT46_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ35939.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
cell division protein FtsI/penicillin-binding protein 2
NECEvent2014_3_1_scaffold_336_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8790..10028)
DNA (1239bp) protein (413aa)
Collagenase n=3 Tax=Clostridium butyricum RepID=B1QYS9_CLOBU rbh
Peptidase, U32 family large subunit C1 {ECO:0000313|EMBL:KJZ83079.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBU
peptidase U32
NECEvent2014_3_1_scaffold_336_10
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10037..10681)
DNA (645bp) protein (215aa)
yrrM; putative O-methyltransferase YrrM (EC:2.1.1.-)
O-methyltransferase family protein n=3 Tax=Clostridium butyricum RepID=B1QYT0_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ84616.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
NECEvent2014_3_1_scaffold_336_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10699..11724)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=3 Tax=Clostridium butyricum RepID=B1QYT1_CLOBU rbh
Aminodeoxychorismate lyase {ECO:0000313|EMBL:EEP54807.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. Bo
aminodeoxychorismate lyase
NECEvent2014_3_1_scaffold_336_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11817..13643)
DNA (1827bp) protein (609aa)
UPI0003D5C205 related cluster n=1 Tax=unknown RepID=UPI0003D5C205 rbh
GTP-binding protein TypA {ECO:0000313|EMBL:KHD15574.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
typA; GTP-binding protein TypA/BipA
NECEvent2014_3_1_scaffold_336_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13964..15631)
DNA (1668bp) protein (556aa)
rnjA1; ribonuclease J 1 (EC:3.1.-.-)
UPI0003D62493 related cluster n=1 Tax=unknown RepID=UPI0003D62493 rbh
Beta-lactamase protein {ECO:0000313|EMBL:ETI91277.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
NECEvent2014_3_1_scaffold_336_14
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15695..16159)
DNA (465bp) protein (155aa)
Transcriptional regulator, Fur family n=3 Tax=Clostridium butyricum RepID=B1QYT4_CLOBU rbh
Ferric uptake regulation protein FUR {ECO:0000313|EMBL:KJZ83106.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN1
fur; ferric uptake regulation protein Fur
NECEvent2014_3_1_scaffold_336_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16220..16498)
DNA (279bp) protein (93aa)
UPI0003D5F038 related cluster n=1 Tax=unknown RepID=UPI0003D5F038
Uncharacterized protein {ECO:0000313|EMBL:KHD15577.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
NECEvent2014_3_1_scaffold_336_16
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16647..17069)
DNA (423bp) protein (141aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1523156 speci
Putative Holliday junction resolvase n=4 Tax=Clostridium butyricum RepID=B1QYT6_CLOBU
Holliday junction resolvase-like protein
NECEvent2014_3_1_scaffold_336_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17117..17374)
DNA (258bp) protein (86aa)
UPF0297 protein CBY_2615 n=4 Tax=Clostridium butyricum RepID=B1QYT7_CLOBU
UPF0297 protein CLP_2735 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str.
hypothetical protein
NECEvent2014_3_1_scaffold_336_18
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17514..18683)
DNA (1170bp) protein (390aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256
alaS; alanine--tRNA ligase AlaS (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AT38_CLOBU
Displaying 18 items

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