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NECEvent2014_3_2_Clostridium_butyricum_31_11

NECEvent2014_3_2_Clostridium_31_11
In projects: NECEvent2014_3_2

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 1-50 of 1098 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_2_scaffold_366 173_006_scaffold_366
Genus: Clostridium (100%)
6 3647 bp 35.02 43.06 89.00
NECEvent2014_3_2_scaffold_1934 173_006_scaffold_1934
Species: Clostridium sp. IBUN13A (100%)
1 1239 bp 32.93 32.69 79.42
NECEvent2014_3_2_scaffold_269 173_006_scaffold_269
Species: Clostridium butyricum (100%)
2 4227 bp 35.82 31.87 93.33
NECEvent2014_3_2_scaffold_882 173_006_scaffold_882
Genus: Clostridium (100%)
3 2168 bp 36.39 29.20 85.79
NECEvent2014_3_2_scaffold_381 173_006_scaffold_381
Species: Clostridium butyricum (50%)
4 3573 bp 33.75 28.97 84.30
NECEvent2014_3_2_scaffold_108 173_006_scaffold_108
Species: Clostridium sp. IBUN125C (100%)
2 7646 bp 33.29 28.13 94.76
NECEvent2014_3_2_scaffold_517 173_006_scaffold_517
Species: Clostridium butyricum (100%)
1 2968 bp 33.69 27.75 88.65
NECEvent2014_3_2_scaffold_69 173_006_scaffold_69
Genus: Clostridium (96.77%)
31 16184 bp 33.78 25.79 88.94
NECEvent2014_3_2_scaffold_360 173_006_scaffold_360
Species: Clostridium butyricum (100%)
1 3680 bp 35.38 25.68 96.36
NECEvent2014_3_2_scaffold_1795 173_006_scaffold_1795
Species: Clostridium butyricum (50%)
2 1314 bp 34.25 25.57 98.63
NECEvent2014_3_2_scaffold_1772 173_006_scaffold_1772
Species: Clostridium butyricum (50%)
2 1325 bp 34.94 25.47 97.81
NECEvent2014_3_2_scaffold_164 173_006_scaffold_164
Species: Clostridium butyricum (66.67%)
6 5594 bp 34.16 24.88 97.18
NECEvent2014_3_2_scaffold_701 173_006_scaffold_701
Species: Clostridium butyricum (50%)
2 2455 bp 28.80 23.95 89.08
NECEvent2014_3_2_scaffold_1517 173_006_scaffold_1517
Species: Clostridium sp. IBUN22A (50%)
2 1494 bp 33.80 23.90 100.20
NECEvent2014_3_2_scaffold_408 173_006_scaffold_408
Species: Clostridium butyricum (60%)
5 3461 bp 34.96 23.32 72.90
NECEvent2014_3_2_scaffold_1325 173_006_scaffold_1325
Species: Clostridium sp. IBUN125C (50%)
2 1648 bp 33.07 23.30 67.72
NECEvent2014_3_2_scaffold_378 173_006_scaffold_378
Species: Clostridium sp. IBUN125C (50%)
4 3604 bp 34.02 23.22 85.24
NECEvent2014_3_2_scaffold_1792 173_006_scaffold_1792
Species: Clostridium butyricum (100%)
1 1315 bp 34.98 23.04 94.90
NECEvent2014_3_2_scaffold_802 173_006_scaffold_802
Species: Clostridium butyricum (100%)
2 2283 bp 32.94 22.86 95.53
NECEvent2014_3_2_scaffold_827 173_006_scaffold_827
Species: Clostridium butyricum (100%)
1 2249 bp 35.30 22.41 90.44
NECEvent2014_3_2_scaffold_1003 173_006_scaffold_1003
Species: Clostridium sp. IBUN125C (100%)
1 1986 bp 31.82 22.36 80.36
NECEvent2014_3_2_scaffold_729 173_006_scaffold_729
Species: Clostridium butyricum (100%)
2 2406 bp 29.93 22.01 87.03
NECEvent2014_3_2_scaffold_755 173_006_scaffold_755
Species: Clostridium sp. IBUN125C (100%)
1 2361 bp 32.27 21.98 88.69
NECEvent2014_3_2_scaffold_909 173_006_scaffold_909
Species: Clostridium butyricum (100%)
1 2117 bp 33.49 21.89 99.20
NECEvent2014_3_2_scaffold_2098 173_006_scaffold_2098
Species: Clostridium sp. IBUN13A (100%)
1 1167 bp 35.39 21.85 99.74
NECEvent2014_3_2_scaffold_456 173_006_scaffold_456
Species: Clostridium sp. IBUN22A (50%)
2 3197 bp 32.47 21.58 91.30
NECEvent2014_3_2_scaffold_333 173_006_scaffold_333
Species: Clostridium sp. IBUN125C (100%)
3 3807 bp 32.76 21.08 85.03
NECEvent2014_3_2_scaffold_1154 173_006_scaffold_1154
Species: Clostridium butyricum (100%)
1 1815 bp 33.00 20.99 95.04
NECEvent2014_3_2_scaffold_2059 173_006_scaffold_2059
Species: Clostridium sp. IBUN125C (100%)
1 1181 bp 33.87 20.96 91.19
NECEvent2014_3_2_scaffold_186 173_006_scaffold_186
Species: Clostridium butyricum (60%)
5 5182 bp 32.48 19.74 88.05
NECEvent2014_3_2_scaffold_588 173_006_scaffold_588
Species: Clostridium butyricum (50%)
2 2775 bp 33.23 19.62 87.14
NECEvent2014_3_2_scaffold_205 173_006_scaffold_205
Species: Clostridium butyricum (60%)
5 4886 bp 32.28 19.56 93.45
NECEvent2014_3_2_scaffold_1311 173_006_scaffold_1311
Species: Clostridium sp. IBUN13A (50%)
2 1658 bp 32.33 19.54 96.80
NECEvent2014_3_2_scaffold_1225 173_006_scaffold_1225
Species: Clostridium sp. IBUN125C (100%)
1 1746 bp 32.30 19.24 81.44
NECEvent2014_3_2_scaffold_1418 173_006_scaffold_1418
Species: Clostridium sp. IBUN125C (100%)
1 1579 bp 30.65 19.19 74.86
NECEvent2014_3_2_scaffold_1209 173_006_scaffold_1209
Species: Clostridium sp. IBUN125C (100%)
1 1760 bp 30.97 19.18 85.91
NECEvent2014_3_2_scaffold_1375 173_006_scaffold_1375
Species: Clostridium sp. IBUN13A (100%)
1 1607 bp 33.91 19.04 99.88
NECEvent2014_3_2_scaffold_413 173_006_scaffold_413
Species: Clostridium sp. IBUN125C (66.67%)
3 3450 bp 33.39 19.04 88.00
NECEvent2014_3_2_scaffold_284 173_006_scaffold_284
Species: Clostridium sp. IBUN13A (50%)
4 4123 bp 33.40 19.03 92.41
NECEvent2014_3_2_scaffold_715 173_006_scaffold_715
Species: Clostridium butyricum (50%)
2 2427 bp 32.88 18.97 93.70
NECEvent2014_3_2_scaffold_859 173_006_scaffold_859
Species: Clostridium butyricum (100%)
1 2199 bp 33.02 18.96 92.09
NECEvent2014_3_2_scaffold_1541 173_006_scaffold_1541
Species: Clostridium butyricum (100%)
1 1481 bp 34.64 18.84 84.67
NECEvent2014_3_2_scaffold_680 173_006_scaffold_680
Species: Clostridium butyricum (50%)
2 2497 bp 34.80 18.74 95.88
NECEvent2014_3_2_scaffold_258 173_006_scaffold_258
Species: Clostridium sp. IBUN13A (50%)
4 4355 bp 32.15 18.74 92.58
NECEvent2014_3_2_scaffold_318 173_006_scaffold_318
Species: Clostridium butyricum (100%)
2 3904 bp 32.86 18.48 89.83
NECEvent2014_3_2_scaffold_1389 173_006_scaffold_1389
Species: Clostridium butyricum (100%)
1 1598 bp 34.29 18.40 96.50
NECEvent2014_3_2_scaffold_1910 173_006_scaffold_1910
Species: Clostridium butyricum (100%)
1 1248 bp 33.33 18.27 95.19
NECEvent2014_3_2_scaffold_1091 173_006_scaffold_1091
Species: Clostridium sp. IBUN125C (100%)
2 1887 bp 32.43 18.20 79.33
NECEvent2014_3_2_scaffold_923 173_006_scaffold_923
Genus: Clostridium (66.67%)
3 2099 bp 34.49 18.15 95.19
NECEvent2014_3_2_scaffold_1384 173_006_scaffold_1384
Species: Clostridium butyricum (100%)
1 1604 bp 32.61 18.14 55.36
Displaying items 1-50 of 1098 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.