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NECEvent2014_3_3_scaffold_170_25

Organism: NECEvent2014_3_3_Citrobacter_KTE32-rel_52_94_partial

partial RP 35 / 55 MC: 3 BSCG 32 / 51 ASCG 12 / 38 MC: 2
Location: comp(25681..26256)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=12 Tax=Citrobacter RepID=D4B6I4_9ENTR similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 191.0
  • Bit_score: 372
  • Evalue 2.40e-100
  • rbh
RNA polymerase sigma factor RpoE similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 191.0
  • Bit_score: 372
  • Evalue 6.60e-101
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freun similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 191.0
  • Bit_score: 372
  • Evalue 3.30e-100

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Taxonomy

Citrobacter freundii → Citrobacter → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 576
ATGAGCGAGCAGTTAACGGACCAGGTCCTGGTAGAACGGGTCCAGAAGGGAGATCAGAAAGCCTTTAACCTACTGGTAGTGCGCTATCAGCATAAGGTGGCGAGTCTGGTTTCTCGCTATGTACCGTCGGGCGATGTACCCGATGTAGTACAAGAAGCATTTATCAAGGCCTATCGTGCGCTGGACTCGTTCCGGGGAGATAGTGCTTTTTATACCTGGCTGTATCGTATTGCAGTCAATACAGCGAAGAATTACCTGGTCGCTCAGGGGCGTCGTCCACCTTCCAGTGATATTGATGCGATTGAAGCAGAAAATTACGAAAGTGGCGGTGCGCTGAAAGAAATTTCGAACCCTGAGAACTTAATGTTGTCAGAAGAACTGAGACAGATAGTTTTCCGGACTATTGAGTCCCTCCCGGAAGATTTACGCATGGCAATAACCTTGCGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCCGCTATCATGGATTGTCCGGTAGGTACGGTGCGTTCACGTATCTTCCGAGCGAGGGAAGCTATTGATAATAAAGTTCAACCGCTTATCAGGCGTTGA
PROTEIN sequence
Length: 192
MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDIDAIEAENYESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR*