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NECEvent2014_3_3_scaffold_258_22

Organism: NECEvent2014_3_3_Citrobacter_KTE32-rel_52_94_partial

partial RP 35 / 55 MC: 3 BSCG 32 / 51 ASCG 12 / 38 MC: 2
Location: comp(19455..22658)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2082
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 99.7
  • Coverage: 999.99
  • Bit_score: 2079
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=2 Tax=Citrobacter RepID=R8V023_9ENTR similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2082
  • Evalue 0.0
  • rbh

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Taxonomy

Citrobacter amalonaticus → Citrobacter → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3204
AACCTGCTCGGTAAGCGTGTTGACTACTCCGGTCGTTCTGTAATCACCGTAGGTCCATACCTGCGTCTGCATCAGTGCGGTCTGCCGAAGAAAATGGCACTGGAACTGTTCAAACCGTTCATTTACGGCAAGCTGGAACTGCGTGGCCTGGCCACCACCATCAAAGCCGCTAAGAAAATGGTTGAGCGTGAAGAAGCTGTCGTTTGGGATATCCTGGACGAAGTTATCCGCGAACACCCGGTACTGCTGAACCGTGCACCAACCCTGCACCGTCTGGGTATCCAGGCATTTGAACCGGTACTGATCGAAGGTAAAGCTATCCAGCTGCACCCGCTGGTTTGTGCGGCATATAACGCCGACTTCGATGGTGACCAGATGGCTGTTCACGTACCGCTGACGCTGGAAGCCCAGCTCGAAGCGCGTGCGCTGATGATGTCTACCAACAACATCCTGTCTCCGGCGAACGGCGAACCTATCATCGTTCCGTCTCAGGACGTTGTATTGGGTCTGTACTACATGACCCGTGACTGTGTTAACGCCAAAGGCGAAGGCATGGTGCTGACTGGCCCGAAAGAAGCTGAGCGTATTTATCGCGCAGGTCTGGCCTCTCTGCATGCGCGCGTTAAAGTGCGTATCACTGAATACGAAAAAGATGAAAACGGCGAATTCGTTGCGCACACCAGCCTGAAAGACACGACCGTTGGTCGCGCCATTCTGTGGATGATCGTACCGAAAGGCCTGCCTTTCTCCATCGTCAACCAGGCGCTGGGCAAGAAAGCAATCTCCAAAATGCTGAACACCTGTTACCGCATTCTGGGCCTGAAGCCGACCGTTATCTTCGCTGACCAGACAATGTACACCGGCTTTGCTTATGCAGCGCGTTCAGGTGCATCTGTTGGTATTGATGACATGGTCATCCCAGAGAAGAAACACGAGATCATCTCTGAAGCGGAAGCTGAAGTTGCTGAGATCCAGGAGCAGTTCCAGTCTGGTCTGGTAACCGCGGGCGAACGCTATAACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACCGAAACCGTGATTAACCGTGACGGCGTAGAAGAGCAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCAGCACAGATTCGTCAGCTGGCCGGTATGCGTGGTCTGATGGCTAAGCCAGATGGCTCCATCATCGAAACGCCAATCACCGCGAACTTCCGTGAAGGTCTGAACGTACTCCAGTACTTCATCTCTACTCACGGTGCTCGTAAAGGTCTGGCGGATACCGCACTGAAAACAGCGAACTCCGGTTATCTGACTCGTCGTCTGGTTGACGTTGCGCAGGACTTGGTTGTTACTGAAGACGATTGCGGCACGCTGGAAGGCATCACCATGACCCCGGTTATCGAGGGTGGTGACGTTAAAGAACCGCTGCGCGATCGCGTTCTGGGTCGTGTGACTGCTGAAGACGTTCTGAAGCCGGGTACGGCGGATATTCTGGTTCCACGCAACACGCTGCTGCACGAACAGTGGTGTGACCTGCTGGAAGAGAACTCCGTTGACTCCGTCAAAGTCCGTTCCGTTGTATCCTGTGACACCGACTTTGGTGTATGTGCGCACTGCTATGGTCGTGACCTGGCGCGTGGCCACATCATCAATAAAGGTGAAGCAATCGGCGTTATCGCGGCACAGTCCATCGGTGAACCGGGTACACAGTTGACGATGCGTACGTTCCACATCGGTGGTGCGGCATCTCGTGCGGCTGCTGAATCCAGCATCCAGGTGAAAAATAAAGGTAGCATCCGTCTGAGCAATGCGAAGTCGGTTGTTAACTCCAGCGGTAAACTGGTTATCACCTCACGTAACACCGAACTGAAACTGATCGACGAATTCGGCCGTACCAAAGAAAGCTATAAAGTGCCTTACGGCTCCGTTATGGCGAAAGGTGATGGCGAACAGGTTGCTGGCGGCGAAACCGTAGCGAACTGGGATCCGCACACCATGCCGGTTATCACCGAAGTGAGTGGTTTCGTCCGCTTCACTGACATGATCGACGGCCAGACCATTACTCGTCAGACCGACGAACTGACCGGTCTGTCTTCTCTGGTGGTTCTGGATTCTGCAGAACGTACTGCGGGTGGTAAAGACCTGCGTCCGGCACTGAAAATTGTTGATGCTCAGGGCAACGACGTTCTGATCCCAGGCACCGATATGCCTGCTCAGTACTTCCTGCCGGGTAAAGCGATTGTTCAGCTGGAAGATGGCGTACAGATCAGTTCTGGTGACACCCTGGCGCGTGTTCCGCAGGAATCCGGCGGTACCAAGGATATCACCGGTGGTCTGCCGCGCGTTGCGGACCTGTTCGAAGCACGTCGTCCGAAAGAGCCGGCAATCCTGGCTGAAATCAGCGGCATCATTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGAGCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTTGTTTCCGACGGTCCGGAAGCGCCGCACGACATCCTGCGTCTGCGTGGTGTGCATGCTGTAACTCGTTATATCGTTAACGAAGTTCAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACGATAAGCACATCGAAGTTATCGTTCGTCAGATGCTGCGTAAAGCCACCATCGAAAGCGCTGGTAGCTCCGACTTCCTGGAAGGCGAGCAGGTTGAATACTCCCGCGTCAAGATTGCTAACCGCGATCTGGAAGCGAACGGCAAAGTGGGTGCAACATTCTCCCGCGATCTGCTGGGTATCACCAAAGCGTCTCTGGCGACCGAGTCCTTCATCTCTGCAGCATCGTTCCAGGAAACCACGCGTGTCCTGACCGAAGCCGCTGTTGCAGGTAAACGTGATGAACTGCGCGGTCTGAAAGAGAACGTTATCGTGGGTCGTCTGATCCCGGCGGGTACCGGTTATGCGTACCACCAGGATCGTATGCGCCGCCGCGCAGCGGGCGAACTGCCAGCTGCTCCGCAGGTGACTGCTGAAGATGCGTCTGCCAGCCTGGCAGAACTGCTGAACGCAGGCCTGGGTGGTTCTGACAACGATTAA
PROTEIN sequence
Length: 1068
NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKVRITEYEKDENGEFVAHTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRLSNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFEGERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPAAPQVTAEDASASLAELLNAGLGGSDND*