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NECEvent2014_3_3_scaffold_120

Alias: 173_001_scaffold_120

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_3_scaffold_120_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(160..768)
DNA (609bp) protein (203aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Bifidobacterium dentium JCVIHMP022 RepID=E1NCQ8_9BIFI rbh
NECEvent2014_3_3_scaffold_120_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(828..1757)
DNA (930bp) protein (310aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000313|EMBL:ETO98313.1}; EC=4.1.1.23 {ECO:0000313|EMBL:ETO98313.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae;
Orotidine 5'-phosphate decarboxylase n=2 Tax=Bifidobacterium dentium RepID=B1S6S0_9BIFI rbh
orotidine 5'-phosphate decarboxylase
NECEvent2014_3_3_scaffold_120_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1760..5140)
DNA (3381bp) protein (1127aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5) rbh
Carbamoyl-phosphate synthase large chain n=2 Tax=Bifidobacterium dentium RepID=D2Q9B4_BIFDB rbh
NECEvent2014_3_3_scaffold_120_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5133..6350)
DNA (1218bp) protein (406aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_012
carA; arbamoyl-phosphate synthase small chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q9B3_BIFDB rbh
NECEvent2014_3_3_scaffold_120_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6440..6883)
DNA (444bp) protein (148aa)
N utilization substance protein B homolog n=3 Tax=Bifidobacterium dentium RepID=B1S545_9BIFI
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1150423 species="Bacteria; Acti
nitrogen utilization protein B
NECEvent2014_3_3_scaffold_120_6
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6909..7472)
DNA (564bp) protein (188aa)
Elongation factor P n=3 Tax=Bifidobacterium RepID=B6XXF9_9BIFI rbh
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobact
elongation factor P
NECEvent2014_3_3_scaffold_120_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7656..8855)
DNA (1200bp) protein (400aa)
Elongation factor Tu n=3 Tax=Bifidobacterium dentium RepID=B1S547_9BIFI rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriale
elongation factor Tu
NECEvent2014_3_3_scaffold_120_8
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9028..11157)
DNA (2130bp) protein (710aa)
fusA; protein translation Elongation Factor G (EF-G) (EC:2.7.7.4)
Elongation factor G n=4 Tax=Bifidobacterium dentium RepID=D2Q9A9_BIFDB rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacte
NECEvent2014_3_3_scaffold_120_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(11189..11659)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=5 Tax=Bifidobacterium RepID=D2Q9A8_BIFDB rbh
rpsG; 30S ribosomal protein S7P
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE1
NECEvent2014_3_3_scaffold_120_10
Bifidobacterium tsurumiense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(11665..12036)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=6 Tax=Bifidobacterium RepID=RS12_BIFAA
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=356829 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" so
30S ribosomal protein S12
NECEvent2014_3_3_scaffold_120_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12816..13103)
DNA (288bp) protein (96aa)
Transporter, Sodium/bile acid symporter family n=4 Tax=Bifidobacterium dentium RepID=D2Q9A6_BIFDB
Uncharacterized protein {ECO:0000313|EMBL:ETO98054.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
Sodium/bile acid symporter family transporter
NECEvent2014_3_3_scaffold_120_trna_1
unknown

Not on your lists

13275..13347
DNA (73bp)
transferRNA
NECEvent2014_3_3_scaffold_120_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13429..14454
DNA (1026bp) protein (342aa)
low specificity-threonine aldolase (EC:4.1.2.5)
Low specificity-threonine aldolase n=2 Tax=Bifidobacterium dentium RepID=D2Q9A5_BIFDB rbh
Beta-eliminating lyase {ECO:0000313|EMBL:ETO98217.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
NECEvent2014_3_3_scaffold_120_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14491..15657)
DNA (1167bp) protein (389aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:ETO98161.1}; EC=2.4.-.- {ECO:0000313|EMBL:ETO98161.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteria
Glycosyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q9A4_BIFDB rbh
glycosyltransferase
NECEvent2014_3_3_scaffold_120_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15693..16946
DNA (1254bp) protein (418aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_0
purT; phosphoribosylglycinamide formyltransferase (EC:4.1.1.21) rbh
Phosphoribosylglycinamide formyltransferase 2 n=2 Tax=Bifidobacterium dentium RepID=E0Q801_9BIFI rbh
NECEvent2014_3_3_scaffold_120_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17069..17821
DNA (753bp) protein (251aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=11
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=3 Tax=Bifidobacterium dentium RepID=B1S4P3_9BIFI rbh
phosphoribosylaminoimidazole-succinocarboxamide synthase
NECEvent2014_3_3_scaffold_120_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17922..21656
DNA (3735bp) protein (1245aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:ETO98249.1}; EC=6.3.5.3 {ECO:0000313|EMBL:ETO98249.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriac
purL; phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
PurL Phosphoribosylformylglycinamidine synthase n=2 Tax=Bifidobacterium dentium RepID=D2Q9A1_BIFDB rbh
NECEvent2014_3_3_scaffold_120_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22065..22703)
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S4P5_9BIFI rbh
PF14014 family protein {ECO:0000313|EMBL:ETO98301.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
NECEvent2014_3_3_scaffold_120_18
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23065..23292)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S4P6_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB09385.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (strain
NECEvent2014_3_3_scaffold_120_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23289..24881)
DNA (1593bp) protein (531aa)
ImpB/MucB/SamB family protein involved in DNA repair (EC:2.7.7.7)
ImpB/MucB/SamB family protein involved in DNA repair n=2 Tax=Bifidobacterium dentium RepID=D2Q998_BIFDB rbh
ImpB/MucB/SamB family protein {ECO:0000313|EMBL:ETO98056.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE
NECEvent2014_3_3_scaffold_120_20
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25067..26581
DNA (1515bp) protein (505aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=4 Tax=Bifidobacterium dentium RepID=E0Q807_9BIFI rbh
NECEvent2014_3_3_scaffold_120_21
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26681..27715
DNA (1035bp) protein (345aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synth
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=2 Tax=Bifidobacterium dentium RepID=E0Q808_9BIFI rbh
NECEvent2014_3_3_scaffold_120_22
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27797..29059
DNA (1263bp) protein (421aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {EC
purD; phosphoribosylamine--glycine ligase (EC:6.3.3.1)
Phosphoribosylamine--glycine ligase n=4 Tax=Bifidobacterium dentium RepID=D2Q995_BIFDB rbh
NECEvent2014_3_3_scaffold_120_23
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29226..31310)
DNA (2085bp) protein (695aa)
Arylsulfatase {ECO:0000313|EMBL:ETO98123.1}; EC=3.1.6.- {ECO:0000313|EMBL:ETO98123.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" sourc
Arylsulfatase n=2 Tax=Bifidobacterium dentium RepID=E0Q810_9BIFI rbh
phosphoglycerol transferase
NECEvent2014_3_3_scaffold_120_24
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31420..31815)
DNA (396bp) protein (132aa)
Ferric uptake regulation protein n=4 Tax=Bifidobacterium dentium RepID=D2Q993_BIFDB
Ferric uptake regulation protein
Ferric uptake regulation protein {ECO:0000313|EMBL:ADB09379.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentiu
NECEvent2014_3_3_scaffold_120_25
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31827..33002)
DNA (1176bp) protein (392aa)
purK; phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit (EC:4.1.1.21) rbh
Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=2 Tax=Bifidobacterium dentium RepID=E0Q812_9BIFI rbh
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU36120
NECEvent2014_3_3_scaffold_120_26
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32986..33483)
DNA (498bp) protein (166aa)
purE; phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=4 Tax=Bifidobacterium dentium RepID=D2Q991_BIFDB rbh
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
NECEvent2014_3_3_scaffold_120_27
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33537..34526)
DNA (990bp) protein (330aa)
adh3; alcohol dehydrogenase (EC:2.3.1.94)
Adh3 Alcohol dehydrogenase n=2 Tax=Bifidobacterium dentium RepID=D2Q990_BIFDB rbh
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26677.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
NECEvent2014_3_3_scaffold_120_28
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34686..36632
DNA (1947bp) protein (649aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteria
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
Dxs 1-deoxy-D-xylulose 5-phosphate synthase n=2 Tax=Bifidobacterium dentium RepID=D2Q989_BIFDB rbh
NECEvent2014_3_3_scaffold_120_29
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36636..38123)
DNA (1488bp) protein (496aa)
Efflux ABC transporter, permease protein n=2 Tax=Bifidobacterium dentium RepID=E0Q816_9BIFI rbh
MacB-like periplasmic core domain protein {ECO:0000313|EMBL:ETO98194.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacter
ABC transporter permease
Displaying items 1-30 of 49 in total

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