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NECEvent2014_3_3_scaffold_177

Alias: 173_001_scaffold_177

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_3_scaffold_177_1
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..293
DNA (291bp) protein (97aa)
gyrA2; DNA gyrase subunit A (EC:5.99.1.3)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae
DNA gyrase/topoisomerase IV, A subunit n=2 Tax=Bifidobacterium dentium RepID=E0Q5Q6_9BIFI
NECEvent2014_3_3_scaffold_177_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(297..5072)
DNA (4776bp) protein (1592aa)
ATP-dependent helicase lhr n=2 Tax=Bifidobacterium dentium RepID=D2QB27_BIFDB rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:ETO96108.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
lhr; ATP-dependent helicase lhr rbh
NECEvent2014_3_3_scaffold_177_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5078..5293)
DNA (216bp) protein (72aa)
DNA-binding helix-turn-helix protein n=2 Tax=Bifidobacterium dentium RepID=E0Q5Q4_9BIFI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFM41978.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium de
XRE family transcriptional regulator
NECEvent2014_3_3_scaffold_177_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5295..5828)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8I4_9BIFI rbh
PF11188 family protein {ECO:0000313|EMBL:ETO96352.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
NECEvent2014_3_3_scaffold_177_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5985..7391
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8I3_9BIFI rbh
PF13777 domain protein {ECO:0000313|EMBL:ETO96120.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein rbh
NECEvent2014_3_3_scaffold_177_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7376..8608)
DNA (1233bp) protein (411aa)
Multidrug resistance protein n=2 Tax=Bifidobacterium dentium RepID=D2QB31_BIFDB rbh
multidrug resistance protein
Multidrug resistance protein {ECO:0000313|EMBL:ADB10017.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (s
NECEvent2014_3_3_scaffold_177_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8770..11106)
DNA (2337bp) protein (779aa)
gyrB2; DNA gyrase subunit B (EC:5.99.1.3)
GyrB2 DNA gyrase subunit B n=2 Tax=Bifidobacterium dentium RepID=D2QB32_BIFDB rbh
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27337.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
NECEvent2014_3_3_scaffold_177_8
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11206..12591)
DNA (1386bp) protein (462aa)
RNA polymerase sigma factor SigA n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8I0_9BIFI rbh
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium d
RNA polymerase sigma factor
NECEvent2014_3_3_scaffold_177_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12738..13463)
DNA (726bp) protein (242aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S8H9_9BIFI rbh
Uncharacterized protein {ECO:0000313|EMBL:ETO96278.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
NECEvent2014_3_3_scaffold_177_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13671..14750
DNA (1080bp) protein (360aa)
idsA; polyprenyl synthase (EC:2.5.1.30)
Polyprenyl synthetase n=2 Tax=Bifidobacterium dentium RepID=E0Q5P7_9BIFI rbh
Polyprenyl synthetase {ECO:0000313|EMBL:ETO96363.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
NECEvent2014_3_3_scaffold_177_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14871..17030
DNA (2160bp) protein (720aa)
pknA2; serine/threonine protein kinase (EC:2.7.11.1) rbh
Kinase domain protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8H7_9BIFI rbh
Kinase domain protein {ECO:0000313|EMBL:ETO96159.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
NECEvent2014_3_3_scaffold_177_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17071..17760)
DNA (690bp) protein (230aa)
plsC2; s1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51)
PlsC2 1-acyl-sn-glycerol-3-phosphate acyltransferase n=4 Tax=Bifidobacterium dentium RepID=D2QB37_BIFDB rbh
Acyltransferase {ECO:0000313|EMBL:ETO96365.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
NECEvent2014_3_3_scaffold_177_13
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17812..18366
DNA (555bp) protein (185aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1S8H5_9BIFI rbh
Uncharacterized protein {ECO:0000313|EMBL:ETO96150.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
membrane protein
NECEvent2014_3_3_scaffold_177_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18546..19598)
DNA (1053bp) protein (351aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1161409 sp
Anthranilate phosphoribosyltransferase n=2 Tax=Bifidobacterium dentium RepID=E0Q5P3_9BIFI rbh
trpD; anthranilate phosphoribosyltransferase
NECEvent2014_3_3_scaffold_177_15
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19829..22705)
DNA (2877bp) protein (959aa)
Protein translocase subunit SecA n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2QB40_BIFDB rbh
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacteri
secA; protein translocase subunit secA
NECEvent2014_3_3_scaffold_177_16
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22899..23555)
DNA (657bp) protein (219aa)
Ribosomal subunit interface protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XTI3_9BIFI rbh
Ribosomal subunit interface protein {ECO:0000313|EMBL:EFM41965.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium den
30S ribosomal protein S30
NECEvent2014_3_3_scaffold_177_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24085..24762)
DNA (678bp) protein (226aa)
Regulatory protein RecX n=1 Tax=Bifidobacterium dentium JCVIHMP022 RepID=E1N9K1_9BIFI rbh
Regulatory protein RecX {ECO:0000313|EMBL:ETO96176.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
RecX-like protein
NECEvent2014_3_3_scaffold_177_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(24766..25926)
DNA (1161bp) protein (387aa)
Protein RecA n=11 Tax=Bifidobacterium RepID=D2QB43_BIFDB rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1161409 species="Bacteria; Actinoba
recA; RecA protein
NECEvent2014_3_3_scaffold_177_19
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26185..26448)
DNA (264bp) protein (88aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=B1S8G8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFM41961.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27
hypothetical protein
NECEvent2014_3_3_scaffold_177_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26523..27032)
DNA (510bp) protein (170aa)
Transcriptional regulator n=4 Tax=Bifidobacterium dentium RepID=D2QB45_BIFDB rbh
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFM41960.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium de
transcriptional regulator
NECEvent2014_3_3_scaffold_177_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27094..27657)
DNA (564bp) protein (188aa)
Competence/damage-inducible domain protein CinA n=2 Tax=Bifidobacterium dentium RepID=E0Q5N5_9BIFI rbh
Competence/damage-inducible protein CinA {ECO:0000313|EMBL:ETO96223.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacteri
cinA; competence-damage protein cinA
NECEvent2014_3_3_scaffold_177_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27663..28322)
DNA (660bp) protein (220aa)
pgsA2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.11) rbh
PgsA2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:ADB10033.1}; EC=2.7.8.11 {ECO:0000313|EMBL:ADB10033.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifi
PgsA2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=3 Tax=Bifidobacterium dentium RepID=D2QB47_BIFDB rbh
NECEvent2014_3_3_scaffold_177_23
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28358..31144)
DNA (2787bp) protein (929aa)
Cell division protein ftsK n=2 Tax=Bifidobacterium dentium RepID=D2QB48_BIFDB rbh
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:ETO96158.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12
ftsK; cell division protein ftsK rbh
NECEvent2014_3_3_scaffold_177_24
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31407..34448
DNA (3042bp) protein (1014aa)
mannan endo-1,4-beta-mannosidase (EC:3.2.1.78)
Mannan endo-1,4-beta-mannosidase n=2 Tax=Bifidobacterium dentium RepID=D2QB49_BIFDB rbh
Glycoside hydrolase, family 26 {ECO:0000313|EMBL:ETO96221.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MST
NECEvent2014_3_3_scaffold_177_25
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34493..35353
DNA (861bp) protein (287aa)
Fic family protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8G2_9BIFI rbh
Fic family protein {ECO:0000313|EMBL:EFM41955.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;
fic; cell filamentation protein fic
NECEvent2014_3_3_scaffold_177_26
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35374..36378)
DNA (1005bp) protein (335aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate
miaA; miaA tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S8G1_9BIFI rbh
NECEvent2014_3_3_scaffold_177_27
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36362..37612)
DNA (1251bp) protein (417aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=2 Tax=Bifidobacterium dentium RepID=E0Q5M9_9BIFI rbh
tRNA 2-methylthioadenosine synthase
Displaying 27 items

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