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NECEvent2014_3_3_scaffold_180

Alias: 173_001_scaffold_180

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_3_scaffold_180_1
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..284)
DNA (282bp) protein (94aa)
araD; L-ribulose-5-phosphate 4-epimerase (EC:4.1.2.17)
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:ADB10501.1}; EC=4.1.2.17 {ECO:0000313|EMBL:ADB10501.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bif
L-ribulose-5-phosphate 4-epimerase n=4 Tax=Bifidobacterium dentium RepID=D2Q6D6_BIFDB
NECEvent2014_3_3_scaffold_180_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(325..1947)
DNA (1623bp) protein (541aa)
xylB; xylulokinase (EC:2.7.1.30)
Carbohydrate kinase, FGGY family protein n=2 Tax=Bifidobacterium dentium RepID=E0Q4H9_9BIFI rbh
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:ETO96591.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacteri
NECEvent2014_3_3_scaffold_180_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2245..3363)
DNA (1119bp) protein (373aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium dentium RepID=D2Q6D8_BIFDB rbh
LacI family transcriptional regulator
Putative transcriptional repressor LacI {ECO:0000313|EMBL:ETO96572.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacteriu
NECEvent2014_3_3_scaffold_180_4
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3499..4959)
DNA (1461bp) protein (487aa)
Maf-like protein (EC:3.6.1.13)
Maf-like protein n=2 Tax=Bifidobacterium dentium RepID=D2Q6D9_BIFDB rbh
Putative septum formation protein Maf {ECO:0000313|EMBL:ETO96565.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium
NECEvent2014_3_3_scaffold_180_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4956..5960)
DNA (1005bp) protein (335aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|
thrB; homoserine kinase (EC:2.7.1.39)
Homoserine kinase n=4 Tax=Bifidobacterium dentium RepID=D2Q6E0_BIFDB rbh
NECEvent2014_3_3_scaffold_180_6
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6105..7421)
DNA (1317bp) protein (439aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobac
thrA; homoserine dehydrogenase (EC:2.7.2.4)
Homoserine dehydrogenase n=2 Tax=Bifidobacterium dentium RepID=D2Q6E1_BIFDB rbh
NECEvent2014_3_3_scaffold_180_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7648..8238
DNA (591bp) protein (197aa)
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1(PTS system) (EC:2.7.1.69)
PTS system, glucose subfamily, IIA component n=2 Tax=Bifidobacterium dentium RepID=E0Q4H4_9BIFI rbh
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EFM42542.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobact
NECEvent2014_3_3_scaffold_180_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8259..9833)
DNA (1575bp) protein (525aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HA
lysA; diaminopimelate decarboxylase (EC:4.1.1.17)
Diaminopimelate decarboxylase n=2 Tax=Bifidobacterium dentium RepID=D2Q6E3_BIFDB rbh
NECEvent2014_3_3_scaffold_180_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9842..11632)
DNA (1791bp) protein (597aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1161409 species="Bacteria; Act
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=2 Tax=Bifidobacterium dentium RepID=E0Q4H2_9BIFI rbh
NECEvent2014_3_3_scaffold_180_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11696..13114)
DNA (1419bp) protein (473aa)
Amino acid permease n=2 Tax=Bifidobacterium dentium RepID=E0Q4H1_9BIFI rbh
Amino acid permease {ECO:0000313|EMBL:ETO96564.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
amino acid permease
NECEvent2014_3_3_scaffold_180_11
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13352..13741)
DNA (390bp) protein (130aa)
Endoribonuclease L-PSP n=4 Tax=Bifidobacterium dentium RepID=D2Q6E6_BIFDB
psp1; endoribonuclease L-PSP
Reactive intermediate/imine deaminase {ECO:0000313|EMBL:ETO96589.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium
NECEvent2014_3_3_scaffold_180_trna_2
unknown

Not on your lists

comp(13786..13858)
DNA (73bp)
transferRNA
NECEvent2014_3_3_scaffold_180_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14008..14622
DNA (615bp) protein (205aa)
Adenylate cyclase n=4 Tax=Bifidobacterium dentium RepID=D2Q6E7_BIFDB rbh
Uncharacterized protein {ECO:0000313|EMBL:ETO96596.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
cyaB; adenylate cyclase
NECEvent2014_3_3_scaffold_180_13
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14663..15631)
DNA (969bp) protein (323aa)
thioredoxin domain-containing protein (EC:1.8.1.9)
Thioredoxin domain-containing protein {ECO:0000313|EMBL:ADB10513.1}; EC=1.8.1.9 {ECO:0000313|EMBL:ADB10513.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; B
Thioredoxin domain-containing protein n=2 Tax=Bifidobacterium dentium RepID=D2Q6E8_BIFDB rbh
NECEvent2014_3_3_scaffold_180_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15736..16743)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=3 Tax=Bifidobacterium dentium RepID=E1NCK9_9BIFI rbh
Putative lipoprotein {ECO:0000313|EMBL:ETO96588.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
NECEvent2014_3_3_scaffold_180_15
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16743..17876)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1SAK8_9BIFI rbh
Uncharacterized protein {ECO:0000313|EMBL:ETO96569.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
NECEvent2014_3_3_scaffold_180_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18101..18913
DNA (813bp) protein (271aa)
fkbP; secreted peptidyl-prolyl cis-trans isomerase protein (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Bifidobacterium dentium RepID=D2Q6F1_BIFDB rbh
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium
NECEvent2014_3_3_scaffold_180_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19746..20381)
DNA (636bp) protein (212aa)
ABC transporter ATP-binding protein (EC:3.6.3.36)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium dentium RepID=E0Q4G1_9BIFI rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ETO96580.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium s
NECEvent2014_3_3_scaffold_180_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20409..21071)
DNA (663bp) protein (221aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1SAF0_9BIFI
Putative membrane protein {ECO:0000313|EMBL:ETO96603.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;
hypothetical protein
NECEvent2014_3_3_scaffold_180_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21068..21760)
DNA (693bp) protein (231aa)
Uncharacterized protein n=4 Tax=Bifidobacterium dentium RepID=B1SAE9_9BIFI rbh
Putative membrane protein {ECO:0000313|EMBL:ETO96614.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;
hypothetical protein
NECEvent2014_3_3_scaffold_180_20
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21753..22625)
DNA (873bp) protein (291aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1SAF2_9BIFI rbh
Putative membrane protein {ECO:0000313|EMBL:ETO96594.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;
hypothetical protein
NECEvent2014_3_3_scaffold_180_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23294..23950
DNA (657bp) protein (219aa)
Two-component response regulator, LuxR family n=2 Tax=Bifidobacterium dentium RepID=D2Q6G2_BIFDB rbh
Sigma-70, region 4 {ECO:0000313|EMBL:ETO96625.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
LuxR family transcriptional regulator
NECEvent2014_3_3_scaffold_180_22
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23984..25180
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium JCVIHMP022 RepID=E1NCP9_9BIFI rbh
Uncharacterized protein {ECO:0000313|EMBL:ETO96610.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
two-component sensor protein
NECEvent2014_3_3_scaffold_180_23
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25330..26034)
DNA (705bp) protein (235aa)
Endonuclease NucS {ECO:0000256|HAMAP-Rule:MF_00722}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00722};; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacter
Endonuclease NucS n=2 Tax=Bifidobacterium dentium RepID=E0Q4F4_9BIFI rbh
hypothetical protein rbh
NECEvent2014_3_3_scaffold_180_24
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26149..26427)
DNA (279bp) protein (93aa)
atpC; ATP synthase subunit epsilon (EC:3.6.3.14)
ATP synthase epsilon chain n=4 Tax=Bifidobacterium dentium RepID=D2Q6G5_BIFDB
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27836.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
NECEvent2014_3_3_scaffold_180_25
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26427..27911)
DNA (1485bp) protein (495aa)
atpD; ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit bet
ATP synthase subunit beta n=2 Tax=Bifidobacterium dentium RepID=D2Q6G6_BIFDB rbh
NECEvent2014_3_3_scaffold_180_26
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27920..28840)
DNA (921bp) protein (307aa)
atpG; ATP synthase subunit gamma (EC:3.6.3.14)
ATP synthase gamma chain n=4 Tax=Bifidobacterium dentium RepID=D2Q6G7_BIFDB rbh
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1435
NECEvent2014_3_3_scaffold_180_27
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28844..30472)
DNA (1629bp) protein (543aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit a
atpA; ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=4 Tax=Bifidobacterium dentium RepID=D2Q6G8_BIFDB rbh
NECEvent2014_3_3_scaffold_180_28
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30546..31373)
DNA (828bp) protein (276aa)
atpH; ATP synthase subunit delta (EC:3.6.3.14)
ATP synthase subunit delta n=4 Tax=Bifidobacterium dentium RepID=D2Q6G9_BIFDB rbh
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; T
NECEvent2014_3_3_scaffold_180_29
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31404..31925)
DNA (522bp) protein (174aa)
atpF; ATP synthase subunit B (EC:3.6.3.14)
ATP synthase subunit b n=4 Tax=Bifidobacterium dentium RepID=D2Q6H0_BIFDB rbh
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398, ECO:0000256|RuleBase:RU003849}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:
Displaying items 1-30 of 35 in total

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