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NECEvent2014_3_3_scaffold_229

Alias: 173_001_scaffold_229

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_3_scaffold_229_1
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..96)
DNA (96bp) protein (32aa)
proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMA
Pyrroline-5-carboxylate reductase n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S611_9BIFI
NECEvent2014_3_3_scaffold_229_2
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(113..1450)
DNA (1338bp) protein (446aa)
pap; Pap Proline iminopeptidase (EC:3.4.11.5)
Pap Proline iminopeptidase n=2 Tax=Bifidobacterium dentium RepID=D2Q9J3_BIFDB rbh
Putative prolyl aminopeptidase {ECO:0000313|EMBL:ETO97854.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MST
NECEvent2014_3_3_scaffold_229_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1680..4217
DNA (2538bp) protein (846aa)
two component system histidine kinase (EC:2.7.13.3)
Two component system histidine kinase n=2 Tax=Bifidobacterium dentium RepID=D2Q9J2_BIFDB rbh
Histidine kinase dimerization/phosphoacceptor domain protein {ECO:0000313|EMBL:ETO97889.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" s
NECEvent2014_3_3_scaffold_229_4
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4248..4994
DNA (747bp) protein (249aa)
two-component response regulator (EC:3.1.1.61) rbh
Two-component response regulator n=2 Tax=Bifidobacterium dentium RepID=D2Q9J1_BIFDB rbh
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26776.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
NECEvent2014_3_3_scaffold_229_5
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5128..7767)
DNA (2640bp) protein (880aa)
Efflux ABC transporter, permease protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7R4_9BIFI rbh
MacB-like periplasmic core domain protein {ECO:0000313|EMBL:ETO97888.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacter
ABC transporter permease
NECEvent2014_3_3_scaffold_229_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7817..8608)
DNA (792bp) protein (264aa)
ABC transporter ATP-binding protein (EC:3.6.3.20)
ATP-binding protein of ABC transporter system n=2 Tax=Bifidobacterium dentium RepID=D2Q9I9_BIFDB rbh
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26774.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
NECEvent2014_3_3_scaffold_229_7
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8728..9726)
DNA (999bp) protein (333aa)
AsnC family transcriptional regulator n=2 Tax=Bifidobacterium dentium RepID=D2Q9I8_BIFDB rbh
Winged helix-turn-helix DNA-binding protein {ECO:0000313|EMBL:ETO97837.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobact
AsnC family transcriptional regulator
NECEvent2014_3_3_scaffold_229_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9760..10569)
DNA (810bp) protein (270aa)
Cobalt transport protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7R7_9BIFI rbh
Cobalt transport protein {ECO:0000313|EMBL:ETO97733.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
cbiQ; CbiQ Cobalt transport protein
NECEvent2014_3_3_scaffold_229_9
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10569..12167)
DNA (1599bp) protein (533aa)
Cobalt ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFM41783.1}; EC=3.6.3.- {ECO:0000313|EMBL:EFM41783.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriac
cobalt ABC transporter (EC:3.6.3.30)
Cobalt ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium dentium RepID=E0Q7R8_9BIFI rbh
NECEvent2014_3_3_scaffold_229_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12281..12820)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S620_9BIFI rbh
ECF-type riboflavin transporter, S component {ECO:0000313|EMBL:ETO97791.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobac
hypothetical protein
NECEvent2014_3_3_scaffold_229_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13102..14412)
DNA (1311bp) protein (437aa)
metY; O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.48)
MetY O-acetylhomoserine aminocarboxypropyltransferase n=2 Tax=Bifidobacterium dentium RepID=D2Q9I4_BIFDB rbh
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26769.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
NECEvent2014_3_3_scaffold_229_12
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14742..15617
DNA (876bp) protein (292aa)
pyridoxine kinase (EC:2.7.1.35)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;
Pyridoxine kinase n=3 Tax=Bifidobacterium dentium RepID=D2Q9I2_BIFDB rbh
NECEvent2014_3_3_scaffold_229_13
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15779..16231
DNA (453bp) protein (151aa)
UPF0102 protein BDP_0807 n=4 Tax=Bifidobacterium dentium RepID=D2Q9I1_BIFDB rbh
endonuclease
UPF0102 protein BDP_0807 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium (s
NECEvent2014_3_3_scaffold_229_14
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16231..16431
DNA (201bp) protein (67aa)
ATPase-like magnesium chelatase subunit ChlI (EC:6.6.1.1); K07391 magnesium chelatase family protein
ATPase-like magnesium chelatase subunit ChlI {ECO:0000313|EMBL:ADB09466.1}; EC=6.6.1.1 {ECO:0000313|EMBL:ADB09466.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteria
Mg chelatase-like protein n=1 Tax=Bifidobacterium dentium JCVIHMP022 RepID=E1N9Z5_9BIFI
NECEvent2014_3_3_scaffold_229_15
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16449..17756
DNA (1308bp) protein (436aa)
ATPase-like magnesium chelatase subunit ChlI (EC:6.6.1.1)
ATPase-like magnesium chelatase subunit ChlI {ECO:0000313|EMBL:ADB09466.1}; EC=6.6.1.1 {ECO:0000313|EMBL:ADB09466.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteria
Mg chelatase-like protein n=1 Tax=Bifidobacterium dentium JCVIHMP022 RepID=E1N9Z5_9BIFI rbh
NECEvent2014_3_3_scaffold_229_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17753..19102
DNA (1350bp) protein (450aa)
Smf protein n=4 Tax=Bifidobacterium dentium RepID=D2Q9H9_BIFDB rbh
Putative DNA protecting protein DprA {ECO:0000313|EMBL:ETO97903.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium s
smf; Smf protein
NECEvent2014_3_3_scaffold_229_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19162..21021
DNA (1860bp) protein (620aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.4.3.16)
SdhA Succinate dehydrogenase flavoprotein subunit n=2 Tax=Bifidobacterium dentium RepID=D2Q9H8_BIFDB rbh
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit {ECO:0000313|EMBL:ETO97887.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacteri
NECEvent2014_3_3_scaffold_229_18
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21081..22007
DNA (927bp) protein (309aa)
sdhB; succinate dehydrogenase iron-sulfur protein (EC:1.3.99.1)
Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S629_9BIFI rbh
Putative succinate dehydrogenase iron-sulfur subunit {ECO:0000313|EMBL:ETO97800.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="B
NECEvent2014_3_3_scaffold_229_19
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22013..22684
DNA (672bp) protein (224aa)
O-methyltransferase n=3 Tax=Bifidobacterium dentium RepID=B1S630_9BIFI rbh
O-methyltransferase {ECO:0000313|EMBL:ETO97835.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
safC; Caffeoyl-CoA O-methyltransferase
NECEvent2014_3_3_scaffold_229_20
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22719..24098)
DNA (1380bp) protein (460aa)
Na(+)/H(+) antiporter NhaA n=3 Tax=Bifidobacterium dentium RepID=B1S631_9BIFI rbh
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifid
nhaA; Na+/H+ antiporter NhaA
NECEvent2014_3_3_scaffold_229_trna_2
unknown

Not on your lists

comp(24243..24316)
DNA (74bp)
transferRNA
NECEvent2014_3_3_scaffold_229_trna_1
unknown

Not on your lists

comp(24361..24434)
DNA (74bp)
transferRNA
NECEvent2014_3_3_scaffold_229_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24522..25838)
DNA (1317bp) protein (439aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=2 Tax=Bifidobacterium dentium RepID=E0Q7T0_9BIFI rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteria
clpX; ATP-dependent Clp protease ATP-binding subunit clpX
NECEvent2014_3_3_scaffold_229_22
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25943..26512)
DNA (570bp) protein (190aa)
clp2; ATP-dependent Clp protease proteolytic subunit 2 (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Bifidobacterium dentium RepID=E0Q7T1_9BIFI rbh
Displaying 24 items

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