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NECEvent2014_3_3_scaffold_230

Alias: 173_001_scaffold_230

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_3_scaffold_230_1
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..902)
DNA (900bp) protein (300aa)
hydrolase (EC:3.5.4.28)
Amidohydrolase family protein n=2 Tax=Bifidobacterium dentium RepID=B1S6C5_9BIFI rbh
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26445.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
NECEvent2014_3_3_scaffold_230_2
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(907..2373)
DNA (1467bp) protein (489aa)
S-adenosylhomocysteine hydrolase (EC:3.3.1.1)
Putative S-adenosylhomocysteine hydrolase {ECO:0000313|EMBL:ADB09148.1}; EC=3.3.1.1 {ECO:0000313|EMBL:ADB09148.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriacea
S-adenosyl-L-homocysteine hydrolase, NAD binding domain protein n=2 Tax=Bifidobacterium dentium RepID=B1S6C4_9BIFI rbh
NECEvent2014_3_3_scaffold_230_3
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2424..3833)
DNA (1410bp) protein (470aa)
DNA repair protein radA n=1 Tax=Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) RepID=D2Q8L3_BIFDB rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;
radA; radA DNA repair protein
NECEvent2014_3_3_scaffold_230_4
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3897..4511
DNA (615bp) protein (205aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S6C2_9BIFI rbh
hypothetical protein
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ26448.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
NECEvent2014_3_3_scaffold_230_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4624..4713
DNA (90bp) protein (30aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DQF6_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI95902.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
NECEvent2014_3_3_scaffold_230_6
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4794..5243)
DNA (450bp) protein (150aa)
rpi; ribose 5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {E
Ribose-5-phosphate isomerase A n=4 Tax=Bifidobacterium dentium RepID=D2Q8L5_BIFDB rbh
NECEvent2014_3_3_scaffold_230_7
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5240..5512)
DNA (273bp) protein (91aa)
rpi; ribose 5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {E
Ribose-5-phosphate isomerase A n=4 Tax=Bifidobacterium dentium RepID=D2Q8L5_BIFDB
NECEvent2014_3_3_scaffold_230_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5653..6855)
DNA (1203bp) protein (401aa)
Ribonuclease HI {ECO:0000313|EMBL:ETO98352.1}; EC=3.1.26.4 {ECO:0000313|EMBL:ETO98352.1};; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" so
rnh; ribonuclease H (EC:3.1.26.4)
Rnh Ribonuclease H n=2 Tax=Bifidobacterium dentium RepID=D2Q8L6_BIFDB rbh
NECEvent2014_3_3_scaffold_230_9
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6893..8260)
DNA (1368bp) protein (456aa)
histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Bifidobacterium dentium RepID=B1S6B9_9BIFI rbh
GHKL domain protein {ECO:0000313|EMBL:ETO98059.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
NECEvent2014_3_3_scaffold_230_10
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8260..9054)
DNA (795bp) protein (265aa)
Response regulator receiver domain protein n=2 Tax=Bifidobacterium dentium RepID=B1S6B8_9BIFI rbh
response regulator of two-component system
Response regulator receiver domain protein {ECO:0000313|EMBL:ETO98038.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacte
NECEvent2014_3_3_scaffold_230_11
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9266..10942)
DNA (1677bp) protein (559aa)
pgm; phosphoglucomutase (EC:2.7.1.106)
Pgm Phosphoglucomutase {ECO:0000313|EMBL:ADB09155.1}; EC=2.7.1.106 {ECO:0000313|EMBL:ADB09155.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacteriu
Pgm Phosphoglucomutase n=4 Tax=Bifidobacterium dentium RepID=D2Q8L9_BIFDB rbh
NECEvent2014_3_3_scaffold_230_12
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11235..13370
DNA (2136bp) protein (712aa)
ptsG; PTS system, glucose-specific IIABC component (EC:2.7.1.69)
Phosphotransferase system, EIIC n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S6B6_9BIFI rbh
PTS system EIIC component {ECO:0000313|EMBL:ETO98247.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;
NECEvent2014_3_3_scaffold_230_13
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13400..14287
DNA (888bp) protein (296aa)
PRD domain protein n=1 Tax=Bifidobacterium dentium ATCC 27679 RepID=E0Q8J4_9BIFI rbh
PRD domain protein {ECO:0000313|EMBL:EFM41136.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;
transcription antiterminator LicT
NECEvent2014_3_3_scaffold_230_14
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14203..15333)
DNA (1131bp) protein (377aa)
Diacylglycerol kinase catalytic domain protein n=2 Tax=Bifidobacterium dentium RepID=E0Q8J3_9BIFI rbh
Diacylglycerol kinase {ECO:0000313|EMBL:ETO98091.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
NECEvent2014_3_3_scaffold_230_15
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15470..16756
DNA (1287bp) protein (429aa)
serS; serS Seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000
Serine--tRNA ligase n=2 Tax=Bifidobacterium dentium RepID=D2Q8M3_BIFDB rbh
NECEvent2014_3_3_scaffold_230_trna_1
unknown

Not on your lists

16992..17076
DNA (85bp)
transferRNA
NECEvent2014_3_3_scaffold_230_16
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17359..20289
DNA (2931bp) protein (977aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2Z9_BIFAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ETO98155.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein rbh
NECEvent2014_3_3_scaffold_230_17
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20589..22727
DNA (2139bp) protein (713aa)
glycosidase (EC:3.2.1.22)
Alpha-galactosidase n=2 Tax=Bifidobacterium dentium RepID=B1S6B1_9BIFI rbh
Alpha-galactosidase {ECO:0000313|EMBL:ETO98063.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
NECEvent2014_3_3_scaffold_230_18
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22796..24154
DNA (1359bp) protein (453aa)
Sugar-binding lipoprotein of ABC transporter system n=6 Tax=Bifidobacterium dentium RepID=D2Q8M6_BIFDB rbh
sugar ABC transporter substrate-binding protein
Sugar-binding lipoprotein of ABC transporter system {ECO:0000313|EMBL:ADB09162.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bif
NECEvent2014_3_3_scaffold_230_19
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24310..25176
DNA (867bp) protein (289aa)
Sugar-binding protein of ABC transporter system n=4 Tax=Bifidobacterium dentium RepID=D2Q8M7_BIFDB rbh
sugar ABC transporter substrate-binding protein
ABC transporter, permease protein {ECO:0000313|EMBL:EFM41128.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium denti
NECEvent2014_3_3_scaffold_230_20
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25173..26054
DNA (882bp) protein (294aa)
ABC transporter system, sugar permease n=3 Tax=Bifidobacterium dentium RepID=D2Q8M8_BIFDB rbh
sugar ABC transporter permease
ABC transporter system, sugar permease {ECO:0000313|EMBL:ADB09164.1}; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium
NECEvent2014_3_3_scaffold_230_21
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26190..27227
DNA (1038bp) protein (346aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium dentium RepID=E1NDA2_9BIFI rbh
Small molecule-binding regulator domain protein {ECO:0000313|EMBL:ETO98032.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifido
LacI family transcriptional regulator
NECEvent2014_3_3_scaffold_230_22
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27654..28694
DNA (1041bp) protein (347aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=B1S6A5_9BIFI rbh
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ETO98318.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;
NECEvent2014_3_3_scaffold_230_23
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29112..30182
DNA (1071bp) protein (357aa)
Phosphotransferase enzyme family n=2 Tax=Bifidobacterium dentium RepID=B1S6A4_9BIFI rbh
PTS family porter {ECO:0000313|EMBL:ETO98080.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MSTE12.;"
hypothetical protein
NECEvent2014_3_3_scaffold_230_24
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30300..31499
DNA (1200bp) protein (400aa)
Amino acid permease n=4 Tax=Bifidobacterium dentium RepID=D2Q8N3_BIFDB rbh
Putative ethanolamine permease {ECO:0000313|EMBL:ETO98158.1}; TaxID=1161409 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. MST
amino acid permease
Displaying 25 items

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