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NECEvent2014_3_3_scaffold_789

Alias: 173_001_scaffold_789

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_3_scaffold_789_1
Gardnerella vaginalis, Gardnerella, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..283)
DNA (282bp) protein (94aa)
50S ribosomal protein L20 n=9 Tax=Gardnerella vaginalis RepID=D2RA83_GARV4
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=698961 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella.;" source
NECEvent2014_3_3_scaffold_789_2
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(336..530)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=4 Tax=Bifidobacterium dentium RepID=D2Q593_BIFDB
rpmI; 50S ribosomal protein
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" so
NECEvent2014_3_3_scaffold_789_3
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(549..1247)
DNA (699bp) protein (233aa)
Translation initiation factor IF-3 n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S7M1_9BIFI rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium
translation initiation factor IF-3
NECEvent2014_3_3_scaffold_789_4
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1503..3389)
DNA (1887bp) protein (629aa)
Asparagine synthetase n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S7M0_9BIFI rbh
Bifidobacterium dentium JCM 1195 = DSM 20436 DNA, complete genome {ECO:0000313|EMBL:BAQ27431.1}; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
asnH; asparagine synthetase
NECEvent2014_3_3_scaffold_789_5
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3548..4294
DNA (747bp) protein (249aa)
Thiamine diphosphokinase {ECO:0000313|EMBL:EFM41910.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EFM41910.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacteriu
thiamin pyrophosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=2 Tax=Bifidobacterium dentium RepID=E1N9E7_9BIFI rbh
NECEvent2014_3_3_scaffold_789_6
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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4456..5511
DNA (1056bp) protein (352aa)
gap; glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12) rbh
Gap Glyceraldehyde 3-phosphate dehydrogenase {ECO:0000313|EMBL:ADB10112.1}; EC=1.2.1.12 {ECO:0000313|EMBL:ADB10112.1};; TaxID=401473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteri
Gap Glyceraldehyde 3-phosphate dehydrogenase n=4 Tax=Bifidobacterium dentium RepID=D2Q597_BIFDB rbh
NECEvent2014_3_3_scaffold_789_7
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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5736..6242
DNA (507bp) protein (169aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1150423 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriace
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=2 Tax=Bifidobacterium dentium RepID=E0Q5I4_9BIFI rbh
hypothetical protein
NECEvent2014_3_3_scaffold_789_8
Bifidobacterium sp. MSTE12, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6257..6745)
DNA (489bp) protein (163aa)
ispH; ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxI
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Bifidobacterium dentium RepID=D2Q599_BIFDB
Displaying 8 items

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