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NECEvent2014_3_3_Bifidobacterium_MSTE12-rel_59_9

NECEvent2014_3_3_Bifidobacterium_58_10
In projects: NECEvent2014_3_3

Consensus taxonomy: Bifidobacterium  →  Bifidobacteriales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Displaying items 1-50 of 239 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_3_scaffold_3237 173_001_scaffold_3237
Species: Bifidobacterium dentium (75%)
4 1658 bp 61.52 3.26 93.00
NECEvent2014_3_3_scaffold_3006 173_001_scaffold_3006
Species: Bifidobacterium sp. MSTE12 (100%)
4 1787 bp 64.75 3.69 89.82
NECEvent2014_3_3_scaffold_3696 173_001_scaffold_3696
Species: Bifidobacterium sp. MSTE12 (100%)
1 1440 bp 61.32 3.75 80.42
NECEvent2014_3_3_scaffold_2335 173_001_scaffold_2335
Species: Bifidobacterium sp. MSTE12 (66.67%)
3 2290 bp 63.49 3.93 86.59
NECEvent2014_3_3_scaffold_1876 173_001_scaffold_1876
Species: Bifidobacterium sp. MSTE12 (100%)
4 2829 bp 54.12 4.14 38.18
NECEvent2014_3_3_scaffold_4939 173_001_scaffold_4939
Species: Bifidobacterium sp. MSTE12 (100%)
1 1026 bp 70.47 4.39 99.71
NECEvent2014_3_3_scaffold_4554 173_001_scaffold_4554
Species: Bifidobacterium sp. MSTE12 (100%)
1 1135 bp 71.81 4.49 99.65
NECEvent2014_3_3_scaffold_2202 173_001_scaffold_2202
Species: Bifidobacterium sp. MSTE12 (100%)
4 2425 bp 58.89 4.95 96.12
NECEvent2014_3_3_scaffold_3456 173_001_scaffold_3456
Species: Bifidobacterium sp. MSTE12 (100%)
1 1548 bp 61.82 5.23 99.81
NECEvent2014_3_3_scaffold_4130 173_001_scaffold_4130
Species: Bifidobacterium adolescentis (50%)
2 1273 bp 56.56 5.42 100.16
NECEvent2014_3_3_scaffold_2593 173_001_scaffold_2593
Species: Bifidobacterium dentium (100%)
2 2072 bp 52.80 5.65 98.31
NECEvent2014_3_3_scaffold_3333 173_001_scaffold_3333
Species: Bifidobacterium sp. MSTE12 (100%)
2 1611 bp 62.57 6.05 99.26
NECEvent2014_3_3_scaffold_2864 173_001_scaffold_2864
Species: Bifidobacterium dentium (100%)
1 1872 bp 60.20 6.25 100.00
NECEvent2014_3_3_scaffold_4604 173_001_scaffold_4604
Species: Bifidobacterium sp. MSTE12 (100%)
1 1123 bp 59.84 6.28 90.56
NECEvent2014_3_3_scaffold_1983 173_001_scaffold_1983
Species: Bifidobacterium dentium (100%)
3 2658 bp 60.20 6.43 74.27
NECEvent2014_3_3_scaffold_2549 173_001_scaffold_2549
Species: Bifidobacterium dentium (100%)
3 2119 bp 62.15 6.80 95.42
NECEvent2014_3_3_scaffold_1724 173_001_scaffold_1724
Species: Bifidobacterium sp. MSTE12 (100%)
2 3109 bp 58.54 6.85 95.14
NECEvent2014_3_3_scaffold_4582 173_001_scaffold_4582
Species: Bifidobacterium dentium (66.67%)
3 1129 bp 57.93 6.91 98.58
NECEvent2014_3_3_scaffold_1592 173_001_scaffold_1592
Species: Bifidobacterium dentium (66.67%)
3 3369 bp 57.52 6.95 92.16
NECEvent2014_3_3_scaffold_1290 173_001_scaffold_1290
Species: Bifidobacterium scardovii (60%)
5 4108 bp 63.22 6.97 93.40
NECEvent2014_3_3_scaffold_1816 173_001_scaffold_1816
Species: Bifidobacterium dentium (66.67%)
3 2927 bp 58.66 6.97 95.52
NECEvent2014_3_3_scaffold_3597 173_001_scaffold_3597
Species: Bifidobacterium dentium (100%)
1 1481 bp 61.04 6.99 82.85
NECEvent2014_3_3_scaffold_4140 173_001_scaffold_4140
Species: Bifidobacterium dentium (100%)
2 1267 bp 60.54 7.10 85.48
NECEvent2014_3_3_scaffold_1818 173_001_scaffold_1818
Species: Bifidobacterium sp. MSTE12 (60%)
5 2921 bp 57.14 7.19 79.70
NECEvent2014_3_3_scaffold_2440 173_001_scaffold_2440
Species: Bifidobacterium sp. MSTE12 (50%)
4 2203 bp 56.29 7.22 73.26
NECEvent2014_3_3_scaffold_2072 173_001_scaffold_2072
Species: Bifidobacterium sp. MSTE12 (100%)
2 2557 bp 59.17 7.22 85.41
NECEvent2014_3_3_scaffold_1063 173_001_scaffold_1063
Species: Bifidobacterium catenulatum (60%)
5 4915 bp 61.61 7.23 98.88
NECEvent2014_3_3_scaffold_2319 173_001_scaffold_2319
Species: Bifidobacterium dentium (100%)
2 2310 bp 64.33 7.27 100.52
NECEvent2014_3_3_scaffold_2623 173_001_scaffold_2623
Species: Bifidobacterium dentium (100%)
2 2045 bp 46.06 7.48 44.74
NECEvent2014_3_3_scaffold_514 173_001_scaffold_514
Species: Bifidobacterium sp. MSTE12 (66.67%)
9 9789 bp 59.87 7.48 93.20
NECEvent2014_3_3_scaffold_4608 173_001_scaffold_4608
Class: Actinobacteria (66.67%)
3 1122 bp 59.36 7.49 90.11
NECEvent2014_3_3_scaffold_4224 173_001_scaffold_4224
Species: Bifidobacterium sp. MSTE12 (50%)
2 1238 bp 58.16 7.51 92.57
NECEvent2014_3_3_scaffold_3085 173_001_scaffold_3085
Species: Bifidobacterium dentium (100%)
2 1736 bp 59.97 7.52 95.56
NECEvent2014_3_3_scaffold_1485 173_001_scaffold_1485
Genus: Bifidobacterium (50%)
10 3604 bp 56.27 7.53 93.06
NECEvent2014_3_3_scaffold_1354 173_001_scaffold_1354
Species: Bifidobacterium sp. MSTE12 (66.67%)
3 3937 bp 60.63 7.58 89.31
NECEvent2014_3_3_scaffold_4218 173_001_scaffold_4218
Species: Bifidobacterium sp. MSTE12 (100%)
3 1239 bp 57.22 7.63 88.38
NECEvent2014_3_3_scaffold_734 173_001_scaffold_734
Species: Bifidobacterium sp. MSTE12 (57.14%)
7 7256 bp 58.27 7.63 94.47
NECEvent2014_3_3_scaffold_1878 173_001_scaffold_1878
Species: Bifidobacterium sp. MSTE12 (66.67%)
3 2827 bp 57.52 7.64 90.31
NECEvent2014_3_3_scaffold_1612 173_001_scaffold_1612
Species: Bifidobacterium dentium (66.67%)
3 3325 bp 60.33 7.67 90.68
NECEvent2014_3_3_scaffold_3076 173_001_scaffold_3076
Species: Bifidobacterium sp. MSTE12 (50%)
2 1741 bp 58.99 7.67 95.81
NECEvent2014_3_3_scaffold_2613 173_001_scaffold_2613
Species: Bifidobacterium kashiwanohense (100%)
3 2062 bp 56.55 7.71 97.04
NECEvent2014_3_3_scaffold_1784 173_001_scaffold_1784
Species: Bifidobacterium sp. MSTE12 (100%)
2 2996 bp 60.08 7.71 92.72
NECEvent2014_3_3_scaffold_1398 173_001_scaffold_1398
Species: Bifidobacterium dentium (63.64%)
11 3827 bp 55.79 7.76 89.05
NECEvent2014_3_3_scaffold_673 173_001_scaffold_673
Species: Bifidobacterium dentium (90%)
10 7781 bp 61.95 7.77 79.12
NECEvent2014_3_3_scaffold_2785 173_001_scaffold_2785
Species: Bifidobacterium dentium (50%)
6 1925 bp 55.22 7.79 91.12
NECEvent2014_3_3_scaffold_2584 173_001_scaffold_2584
Species: Bifidobacterium dentium (50%)
2 2080 bp 58.46 7.79 97.64
NECEvent2014_3_3_scaffold_4859 173_001_scaffold_4859
Species: Bifidobacterium dentium (100%)
2 1047 bp 61.13 7.88 85.67
NECEvent2014_3_3_scaffold_1296 173_001_scaffold_1296
Species: Bifidobacterium sp. MSTE12 (50%)
6 4083 bp 54.47 7.90 70.78
NECEvent2014_3_3_scaffold_857 173_001_scaffold_857
Species: Bifidobacterium dentium (50%)
14 6252 bp 63.05 7.92 77.98
NECEvent2014_3_3_scaffold_1807 173_001_scaffold_1807
Species: Bifidobacterium dentium (66.67%)
3 2952 bp 60.70 7.93 87.91
Displaying items 1-50 of 239 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.