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NECEvent2014_3_3_Clostridium_ultunense-rel_31_8

NECEvent2014_3_3_Clostridium_31_9
In projects: NECEvent2014_3_3

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_3_3_UNK

Properties

Avg. coverage: 8.64 Longest contig: 24.44 Kbp Bin length: 3.31 Mbp GC content: 31.27 %
Contigs count: 723 Features count: 3690 rRNAs count: 1 tRNAs count: 30

Genome completeness

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 14 / 38 MC: 3

Description

May be a relatively novel Clostridium (see 16S rRNA) and rpL9

Displaying items 1-50 of 723 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_3_scaffold_242 173_001_scaffold_242
Species: Clostridium botulinum (58.06%)
31 24087 bp 31.47 8.38 94.92
NECEvent2014_3_3_scaffold_332 173_001_scaffold_332
Species: Clostridium ultunense (73.33%)
30 15422 bp 33.98 9.93 89.15
NECEvent2014_3_3_scaffold_254 173_001_scaffold_254
Species: Clostridium ultunense (64%)
25 22955 bp 31.20 9.57 94.12
NECEvent2014_3_3_scaffold_238 173_001_scaffold_238
Genus: Clostridium (52.17%)
23 24441 bp 32.82 11.16 85.47
NECEvent2014_3_3_scaffold_276 173_001_scaffold_276
Species: Clostridium ultunense (50%)
20 20083 bp 31.74 9.19 91.69
NECEvent2014_3_3_scaffold_320 173_001_scaffold_320
Order: Clostridiales (68.42%)
19 16254 bp 29.33 8.04 89.48
NECEvent2014_3_3_scaffold_278 173_001_scaffold_278
Species: Clostridium ultunense (68.42%)
19 19854 bp 31.83 9.29 89.78
NECEvent2014_3_3_scaffold_299 173_001_scaffold_299
Genus: Clostridium (58.82%)
17 17612 bp 32.05 9.46 87.08
NECEvent2014_3_3_scaffold_326 173_001_scaffold_326
Order: Clostridiales (100%)
17 15881 bp 30.65 8.80 93.00
NECEvent2014_3_3_scaffold_328 173_001_scaffold_328
Genus: Clostridium (64.71%)
17 15832 bp 33.42 10.64 86.40
NECEvent2014_3_3_scaffold_407 173_001_scaffold_407
Order: Clostridiales (58.82%)
17 11956 bp 29.82 8.24 88.35
NECEvent2014_3_3_scaffold_1740 173_001_scaffold_1740 17 3079 bp 39.10 13.01 71.22
NECEvent2014_3_3_scaffold_353 173_001_scaffold_353
Species: Clostridium ultunense (81.25%)
16 14205 bp 33.97 9.65 92.29
NECEvent2014_3_3_scaffold_367 173_001_scaffold_367
Species: Clostridium ultunense (68.75%)
16 13600 bp 31.82 8.64 86.87
NECEvent2014_3_3_scaffold_419 173_001_scaffold_419
Genus: Clostridium (68.75%)
16 11714 bp 28.02 7.94 77.80
NECEvent2014_3_3_scaffold_505 173_001_scaffold_505
Order: Clostridiales (87.5%)
16 9883 bp 30.73 8.35 87.57
NECEvent2014_3_3_scaffold_586 173_001_scaffold_586
Class: Clostridia (53.33%)
15 8745 bp 32.12 8.63 92.73
NECEvent2014_3_3_scaffold_344 173_001_scaffold_344
Species: Clostridium ultunense (66.67%)
15 14798 bp 31.41 8.71 90.70
NECEvent2014_3_3_scaffold_361 173_001_scaffold_361
Genus: Clostridium (80%)
15 13876 bp 32.28 8.06 92.06
NECEvent2014_3_3_scaffold_384 173_001_scaffold_384
Order: Clostridiales (73.33%)
15 12788 bp 30.65 9.25 78.21
NECEvent2014_3_3_scaffold_460 173_001_scaffold_460
Order: Clostridiales (73.33%)
15 10704 bp 30.53 12.23 78.48
NECEvent2014_3_3_scaffold_483 173_001_scaffold_483
Phylum: Firmicutes (80%)
15 10316 bp 32.06 10.51 69.65
NECEvent2014_3_3_scaffold_509 173_001_scaffold_509
Phylum: Firmicutes (80%)
15 9839 bp 30.40 7.70 96.53
NECEvent2014_3_3_scaffold_334 173_001_scaffold_334
Order: Clostridiales (64.29%)
14 15366 bp 31.60 9.22 91.80
NECEvent2014_3_3_scaffold_363 173_001_scaffold_363
Order: Clostridiales (92.86%)
14 13732 bp 31.07 8.88 90.29
NECEvent2014_3_3_scaffold_409 173_001_scaffold_409
Order: Clostridiales (78.57%)
14 11922 bp 34.52 11.65 92.60
NECEvent2014_3_3_scaffold_666 173_001_scaffold_666
Order: Clostridiales (50%)
14 7892 bp 32.20 8.40 98.26
NECEvent2014_3_3_scaffold_412 173_001_scaffold_412
Genus: Clostridium (57.14%)
14 11829 bp 28.38 8.53 90.64
NECEvent2014_3_3_scaffold_422 173_001_scaffold_422
Order: Clostridiales (92.86%)
14 11671 bp 30.24 6.84 95.80
NECEvent2014_3_3_scaffold_451 173_001_scaffold_451
Order: Clostridiales (71.43%)
14 10839 bp 29.54 7.40 82.09
NECEvent2014_3_3_scaffold_466 173_001_scaffold_466
Genus: Clostridium (78.57%)
14 10633 bp 29.69 8.61 88.23
NECEvent2014_3_3_scaffold_356 173_001_scaffold_356
Species: Clostridium ultunense (61.54%)
13 14115 bp 30.58 8.69 89.37
NECEvent2014_3_3_scaffold_369 173_001_scaffold_369
Order: Clostridiales (69.23%)
13 13508 bp 33.45 10.16 90.30
NECEvent2014_3_3_scaffold_632 173_001_scaffold_632
Species: Clostridium ultunense (84.62%)
13 8273 bp 30.07 8.61 88.55
NECEvent2014_3_3_scaffold_436 173_001_scaffold_436
Species: Clostridium ultunense (92.31%)
13 11261 bp 30.56 8.01 95.53
NECEvent2014_3_3_scaffold_448 173_001_scaffold_448
Order: Clostridiales (84.62%)
13 10988 bp 30.79 8.96 93.07
NECEvent2014_3_3_scaffold_470 173_001_scaffold_470
Genus: Clostridium (61.54%)
13 10499 bp 32.07 9.29 90.29
NECEvent2014_3_3_scaffold_528 173_001_scaffold_528
Genus: Clostridium (69.23%)
13 9582 bp 28.90 8.61 77.21
NECEvent2014_3_3_scaffold_321 173_001_scaffold_321
Order: Clostridiales (75%)
12 16224 bp 31.13 9.01 84.12
NECEvent2014_3_3_scaffold_583 173_001_scaffold_583
Genus: Clostridium (58.33%)
12 8819 bp 32.08 8.74 92.43
NECEvent2014_3_3_scaffold_336 173_001_scaffold_336
Genus: Clostridium (50%)
12 15176 bp 32.25 9.07 88.62
NECEvent2014_3_3_scaffold_372 173_001_scaffold_372
Genus: Clostridium (75%)
12 13430 bp 30.75 8.69 91.61
NECEvent2014_3_3_scaffold_635 173_001_scaffold_635
Order: Clostridiales (50%)
12 8239 bp 32.07 9.58 87.72
NECEvent2014_3_3_scaffold_387 173_001_scaffold_387
Order: Clostridiales (66.67%)
12 12703 bp 29.63 9.25 70.90
NECEvent2014_3_3_scaffold_425 173_001_scaffold_425
Species: Clostridium butyricum (75%)
12 11445 bp 30.97 8.52 90.25
NECEvent2014_3_3_scaffold_445 173_001_scaffold_445
Species: Clostridium ultunense (66.67%)
12 11033 bp 30.96 7.94 93.95
NECEvent2014_3_3_scaffold_832 173_001_scaffold_832
Species: Clostridium ultunense (81.82%)
11 6398 bp 29.20 7.57 95.09
NECEvent2014_3_3_scaffold_597 173_001_scaffold_597
Order: Clostridiales (54.55%)
11 8678 bp 31.65 8.99 68.31
NECEvent2014_3_3_scaffold_873 173_001_scaffold_873
Order: Clostridiales (63.64%)
11 6149 bp 32.53 9.39 93.04
NECEvent2014_3_3_scaffold_376 173_001_scaffold_376
Order: Clostridiales (81.82%)
11 13167 bp 30.45 8.82 90.91
Displaying items 1-50 of 723 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.