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NECEvent2014_3_3_scaffold_1162_4

Organism: NECEvent2014_3_3_Clostridium_ultunense-rel_31_8

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 14 / 38 MC: 3
Location: comp(2882..3415)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MIT7_ALKOO similarity UNIREF
DB: UNIREF100
  • Identity: 74.0
  • Coverage: 177.0
  • Bit_score: 272
  • Evalue 3.10e-70
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 73.4
  • Coverage: 177.0
  • Bit_score: 271
  • Evalue 1.90e-70
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABW19719.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphil similarity UNIPROT
DB: UniProtKB
  • Identity: 73.4
  • Coverage: 177.0
  • Bit_score: 271
  • Evalue 9.60e-70

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Taxonomy

Alkaliphilus oremlandii → Alkaliphilus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 534
TTGGATGTTGCAGAGTTAACTCATTTAATTGAAAGCCATGGTAAGGATGTGTATGGATTTTGTTGTAAATTGACAATGGATAAACATCAAGCAGATGATTTATATCAGGAAACCTTTTTGAAAGCGTTAGAGTTATGCCATAAAATAGATAGAAACAAAAATCCAAAGAGCTTTCTCATAGCTATTGCAGCAAATATGTGGAAGAATCAGAATCGAAAATTTGGTTGGAGGCATAGGATTGCAAAGATAGTAGAATTTAAAGATGATTTTGATAATGAGTCATACATGATTGATACTACAACACCAGAACTTGTAGCCATAAATAATGAAGCTTATACGATGGTTGATAGAGCTTCAGCATCGTTAAATGATAAATTGAAAATACCTTTATATATGTACTACAATACTGGATTATCGATTGAAGATATTGCATCCGCACTCAAAATTCCAACTGGAACTGTAAAGAGTAGGCTTTATAAAGCTAGGAAATTAATTAAAGAATATATGGAGGTCAATGGATATGAAGGATTTTGA
PROTEIN sequence
Length: 178
LDVAELTHLIESHGKDVYGFCCKLTMDKHQADDLYQETFLKALELCHKIDRNKNPKSFLIAIAANMWKNQNRKFGWRHRIAKIVEFKDDFDNESYMIDTTTPELVAINNEAYTMVDRASASLNDKLKIPLYMYYNTGLSIEDIASALKIPTGTVKSRLYKARKLIKEYMEVNGYEGF*