ggKbase home page
Advanced Search
Search Help

NECEvent2014_3_3_Clostridium_ultunense-rel_31_8

NECEvent2014_3_3_Clostridium_31_9
In projects: NECEvent2014_3_3

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_3_3_UNK

Properties

Avg. coverage: 8.64 Longest contig: 24.44 Kbp Bin length: 3.31 Mbp GC content: 31.27 %
Contigs count: 723 Features count: 3690 rRNAs count: 1 tRNAs count: 30

Genome completeness

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 14 / 38 MC: 3

Description

May be a relatively novel Clostridium (see 16S rRNA) and rpL9

Displaying items 101-150 of 723 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_3_scaffold_2713 173_001_scaffold_2713
Species: Clostridium ultunense (100%)
3 1988 bp 27.77 6.79 61.42
NECEvent2014_3_3_scaffold_1067 173_001_scaffold_1067
Genus: Clostridium (66.67%)
6 4895 bp 27.66 6.80 80.41
NECEvent2014_3_3_scaffold_4233 173_001_scaffold_4233
Species: Clostridium botulinum (50%)
2 1236 bp 24.11 6.80 100.49
NECEvent2014_3_3_scaffold_942 173_001_scaffold_942
Order: Clostridiales (100%)
5 5704 bp 29.26 6.81 95.46
NECEvent2014_3_3_scaffold_4533 173_001_scaffold_4533
Species: Clostridium ultunense (50%)
2 1143 bp 25.37 6.82 67.19
NECEvent2014_3_3_scaffold_4252 173_001_scaffold_4252
Species: Thermobrachium celere (50%)
2 1230 bp 28.46 6.83 77.56
NECEvent2014_3_3_scaffold_422 173_001_scaffold_422
Order: Clostridiales (92.86%)
14 11671 bp 30.24 6.84 95.80
NECEvent2014_3_3_scaffold_4844 173_001_scaffold_4844
Species: Clostridium ultunense (100%)
1 1051 bp 24.83 6.85 79.64
NECEvent2014_3_3_scaffold_2119 173_001_scaffold_2119
Species: Clostridium sp. BL8 (66.67%)
3 2497 bp 29.76 6.85 88.31
NECEvent2014_3_3_scaffold_3581 173_001_scaffold_3581
Order: Clostridiales (66.67%)
3 1489 bp 28.81 6.85 88.65
NECEvent2014_3_3_scaffold_1314 173_001_scaffold_1314
Species: Clostridium ultunense (66.67%)
3 4027 bp 31.04 6.85 100.05
NECEvent2014_3_3_scaffold_2173 173_001_scaffold_2173
Species: Clostridium ultunense (50%)
4 2450 bp 27.55 6.86 89.39
NECEvent2014_3_3_scaffold_4010 173_001_scaffold_4010
Species: Clostridium botulinum (50%)
2 1312 bp 26.98 6.86 55.79
NECEvent2014_3_3_scaffold_2860 173_001_scaffold_2860
Species: Clostridium ultunense (100%)
3 1876 bp 31.45 6.88 94.51
NECEvent2014_3_3_scaffold_3327 173_001_scaffold_3327
Species: Gottschalkia acidurici (50%)
4 1613 bp 29.82 6.88 79.79
NECEvent2014_3_3_scaffold_3906 173_001_scaffold_3906
Species: Clostridium ultunense (100%)
2 1350 bp 34.89 6.89 99.11
NECEvent2014_3_3_scaffold_2191 173_001_scaffold_2191
Species: Clostridium ultunense (50%)
4 2439 bp 30.96 6.89 79.09
NECEvent2014_3_3_scaffold_1732 173_001_scaffold_1732
Species: Clostridium ultunense (100%)
2 3093 bp 30.33 6.89 95.54
NECEvent2014_3_3_scaffold_2865 173_001_scaffold_2865
Species: Clostridium sp. DL-VIII (50%)
2 1870 bp 26.79 6.90 98.50
NECEvent2014_3_3_scaffold_639 173_001_scaffold_639
Order: Clostridiales (70%)
10 8215 bp 30.77 6.90 90.49
NECEvent2014_3_3_scaffold_3809 173_001_scaffold_3809
Species: Clostridium ultunense (50%)
2 1391 bp 27.89 6.90 90.15
NECEvent2014_3_3_scaffold_4292 173_001_scaffold_4292
Species: Clostridium ultunense (100%)
2 1218 bp 28.74 6.90 98.77
NECEvent2014_3_3_scaffold_944 173_001_scaffold_944
Genus: Clostridium (60%)
5 5689 bp 32.08 6.91 88.64
NECEvent2014_3_3_scaffold_1989 173_001_scaffold_1989
Species: Clostridium ultunense (75%)
4 2650 bp 31.58 6.91 82.30
NECEvent2014_3_3_scaffold_4458 173_001_scaffold_4458
Species: Lachnospiraceae bacterium 5_1_57FAA (100%)
1 1170 bp 34.53 6.92 80.77
NECEvent2014_3_3_scaffold_1615 173_001_scaffold_1615
Species: Clostridium ultunense (100%)
4 3314 bp 27.91 6.93 98.04
NECEvent2014_3_3_scaffold_1972 173_001_scaffold_1972
Species: Lachnoclostridium phytofermentans (50%)
2 2683 bp 28.40 6.93 58.81
NECEvent2014_3_3_scaffold_2815 173_001_scaffold_2815
Species: Clostridium kluyveri (50%)
2 1906 bp 30.06 6.93 81.06
NECEvent2014_3_3_scaffold_3994 173_001_scaffold_3994
Species: Clostridium ultunense (50%)
2 1318 bp 28.00 6.94 100.15
NECEvent2014_3_3_scaffold_737 173_001_scaffold_737
Order: Clostridiales (66.67%)
6 7236 bp 29.27 6.94 86.65
NECEvent2014_3_3_scaffold_3094 173_001_scaffold_3094
Order: Clostridiales (75%)
4 1730 bp 27.11 6.94 74.91
NECEvent2014_3_3_scaffold_3951 173_001_scaffold_3951
Species: Clostridium ultunense (50%)
2 1334 bp 30.81 6.97 96.48
NECEvent2014_3_3_scaffold_3384 173_001_scaffold_3384
Species: Clostridium botulinum (100%)
2 1587 bp 28.99 6.99 83.55
NECEvent2014_3_3_scaffold_4019 173_001_scaffold_4019
Phylum: Firmicutes (66.67%)
3 1309 bp 27.81 6.99 89.38
NECEvent2014_3_3_scaffold_1937 173_001_scaffold_1937
Species: Clostridium ultunense (100%)
3 2743 bp 27.89 7.00 93.73
NECEvent2014_3_3_scaffold_3551 173_001_scaffold_3551
Species: Clostridium ultunense (66.67%)
3 1501 bp 29.05 7.00 73.55
NECEvent2014_3_3_scaffold_798 173_001_scaffold_798
Genus: Clostridium (71.43%)
7 6682 bp 29.48 7.00 87.50
NECEvent2014_3_3_scaffold_674 173_001_scaffold_674
Species: Clostridium ultunense (87.5%)
8 7781 bp 29.94 7.02 89.76
NECEvent2014_3_3_scaffold_3615 173_001_scaffold_3615
Species: Clostridium ultunense (50%)
2 1471 bp 27.40 7.04 93.61
NECEvent2014_3_3_scaffold_1326 173_001_scaffold_1326
Species: Clostridium ultunense (100%)
4 3999 bp 31.76 7.05 88.60
NECEvent2014_3_3_scaffold_1903 173_001_scaffold_1903
Phylum: Firmicutes (60%)
5 2787 bp 31.00 7.05 77.07
NECEvent2014_3_3_scaffold_1880 173_001_scaffold_1880
Species: Clostridium sp. BL8 (50%)
4 2825 bp 28.92 7.06 50.23
NECEvent2014_3_3_scaffold_886 173_001_scaffold_886
Genus: Clostridium (60%)
5 6059 bp 30.96 7.06 86.60
NECEvent2014_3_3_scaffold_2243 173_001_scaffold_2243
Species: Clostridium ultunense (75%)
4 2378 bp 30.19 7.06 93.99
NECEvent2014_3_3_scaffold_1934 173_001_scaffold_1934
Species: Clostridium ultunense (100%)
2 2747 bp 32.03 7.10 96.21
NECEvent2014_3_3_scaffold_3902 173_001_scaffold_3902
Species: Clostridium ultunense (50%)
2 1350 bp 32.59 7.11 84.00
NECEvent2014_3_3_scaffold_1164 173_001_scaffold_1164
Species: Clostridium ultunense (100%)
6 4512 bp 28.97 7.11 97.07
NECEvent2014_3_3_scaffold_1982 173_001_scaffold_1982
Species: Filifactor alocis (50%)
2 2659 bp 29.82 7.11 98.83
NECEvent2014_3_3_scaffold_1395 173_001_scaffold_1395
Species: Clostridiales bacterium oral taxon 876 (75%)
4 3832 bp 33.59 7.12 96.69
NECEvent2014_3_3_scaffold_1166 173_001_scaffold_1166
Species: Clostridium ultunense (85.71%)
7 4509 bp 28.59 7.12 90.49
Displaying items 101-150 of 723 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.