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NECEvent2014_3_4_scaffold_427

Alias: 173_002_scaffold_427

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_4_scaffold_427_1
unknown

Not on your lists

comp(417..542)
DNA (126bp) protein (42aa)

This feature has no annotations

NECEvent2014_3_4_scaffold_427_2
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(512..706)
DNA (195bp) protein (65aa)
Cell wall hydrolase/autolysin n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TQX4_ALKMQ
cell wall hydrolase/autolysin
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:ABR48592.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens
NECEvent2014_3_4_scaffold_427_3
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(982..2325)
DNA (1344bp) protein (448aa)
rsmB; ribosomal RNA small subunit methyltransferase B (EC:2.1.1.-) rbh
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Go
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AY16_CLOA9 rbh
NECEvent2014_3_4_scaffold_427_4
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2387..3085)
DNA (699bp) protein (233aa)
Putative membrane protease yugP {ECO:0000313|EMBL:CCQ96057.1}; EC=3.4.24.- {ECO:0000313|EMBL:CCQ96057.1};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clost
yugP; putative membrane protease YugP (EC:3.4.24.-)
Putative membrane protease yugP n=1 Tax=Clostridium ultunense Esp RepID=M1ZKU4_9CLOT rbh
NECEvent2014_3_4_scaffold_427_5
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3105..4034)
DNA (930bp) protein (310aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1288971 species="
fmt; methionyl-tRNA formyltransferase Fmt (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium ultunense Esp RepID=M1ZC35_9CLOT rbh
NECEvent2014_3_4_scaffold_427_6
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4037..4519)
DNA (483bp) protein (161aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
def2; peptide deformylase Def (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Clostridium ultunense Esp RepID=M1YZM6_9CLOT
NECEvent2014_3_4_scaffold_427_7
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4531..7011)
DNA (2481bp) protein (827aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1288971 species="Bacteria;
priA; primosome assembly protein PriA (EC:3.6.4.-)
Primosomal protein N n=1 Tax=Clostridium ultunense Esp RepID=M1ZCZ8_9CLOT rbh
NECEvent2014_3_4_scaffold_427_8
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7051..8259)
DNA (1209bp) protein (403aa)
Fused 4'-phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine synthetase,FMN-binding {ECO:0000313|EMBL:CCQ96053.1}; EC=4.1.1.36 {ECO:0000313|EMBL:CCQ96053.1};; EC=6.3.2.5 {ECO:0000313
coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate cysteine ligase (EC:4.1.1.36 6.3.2.5)
Fused 4'-phosphopantothenoylcysteine decarboxylase phosphopantothenoylcysteine synthetase,FMN-binding n=1 Tax=Clostridium ultunense Esp RepID=M1ZDP2_9CLOT rbh
NECEvent2014_3_4_scaffold_427_9
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8271..8480)
DNA (210bp) protein (70aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=1 Tax=Clostridium ultunense Esp RepID=M1ZKU3_9CLOT
DNA-directed RNA polymerase, omega subunit
NECEvent2014_3_4_scaffold_427_10
Peptoniphilus sp. BV3C26, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8482..9096)
DNA (615bp) protein (205aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
gmk; Guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Clostridiales bacterium BV3C26 RepID=U7UJC5_9FIRM rbh
NECEvent2014_3_4_scaffold_427_11
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(9122..9379)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Bacillus sp. AP8 RepID=UPI0002D3A2C3
hypothetical protein
UPF0296 protein Toce_1021 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermose
NECEvent2014_3_4_scaffold_427_12
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9395..10276)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZDN9_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCQ96048.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
YicC-like protein
NECEvent2014_3_4_scaffold_427_13
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10457..12232
DNA (1776bp) protein (592aa)
Fibronectin-binding protein A n=1 Tax=Clostridium ultunense Esp RepID=M1ZKU2_9CLOT rbh
Fibronectin-binding protein A {ECO:0000313|EMBL:CCQ96047.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
fbpA; fibronectin-binding protein FbpA rbh
NECEvent2014_3_4_scaffold_427_14
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12245..12781)
DNA (537bp) protein (179aa)
pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase PyrR (EC:2.4.2.9)
Bifunctional protein PyrR n=1 Tax=Clostridium ultunense Esp RepID=M1ZC24_9CLOT
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
NECEvent2014_3_4_scaffold_427_15
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12784..13701)
DNA (918bp) protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalin
RluA family pseudouridine synthase (EC:5.4.99.23)
Pseudouridine synthase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CRJ4_9CLOT rbh
NECEvent2014_3_4_scaffold_427_16
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13711..13923)
DNA (213bp) protein (71aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal pep
lspA; signal peptidase II (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Clostridium ultunense Esp RepID=M1ZCZ0_9CLOT
Displaying 16 items

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