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NECEvent2014_3_4_scaffold_417_2

Organism: NECEvent2014_3_4_Bifidobacterium_MSTE12-rel_58_13

near complete RP 51 / 55 MC: 4 BSCG 49 / 51 ASCG 13 / 38
Location: 748..1359

Top 3 Functional Annotations

Value Algorithm Source
SigH RNA polymerase ECF-type sigma factor n=4 Tax=Bifidobacterium dentium RepID=D2Q5A2_BIFDB similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 191.0
  • Bit_score: 381
  • Evalue 7.00e-103
  • rbh
Sigma-70 region 2 {ECO:0000313|EMBL:EFM41904.1}; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 203.0
  • Bit_score: 403
  • Evalue 1.40e-109
sigH; sigH RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 191.0
  • Bit_score: 381
  • Evalue 2.00e-103

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Taxonomy

Bifidobacterium dentium → Bifidobacterium → Bifidobacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 612
ATGACGGACAGGCGCGCGCGCTTCGAACGGCTCGCCATGCCCATCGTCGACGTGCTCTATCGGCAGGCCATGAAGCTGACCAACAATCCCGACGATGCGCAGGATCTGGTGCAGGACACCTTCGAACGCGGGTTCAAGGCCTTCGATTCCTTCAAACAGGGCACGAACTTCGCCGCGTGGATGACCACCATCGAGCGCAACGCCTACTTCAATCAGTACGCCAAGGCCAAACGCAGGCCGCAACGTGCCAACGGCTCCACCGGCGAATACGACGATTGGGATATCTACTCCGCCTCCGAACATTCGTCGGAGCAGCTGAAGTCCGCCGAACAGGAGTATCTGGACGCCTATGCGCCCGAAGAGATCATGGCCGCGTTGAACAAGCTTTCGCCGGAACGCAGGCAGGTGTTCATCGATGCGGCCATCGACGGCAAGTCATATCAGCAGGTGGCCGATGAGCAGGGCGTGAAAATCGGTACGGTGATGAGCCGTCTGAACCGTGCCCGCACGCAGCTCAAGCAGGAACTTGCGGCATATGCGAAGGAACGAGGGTATGCGGCCGGCACACGCTCCGGTGCGAAGACCGCTTCCGTCGGAAGGGGAAGATCATGA
PROTEIN sequence
Length: 204
MTDRRARFERLAMPIVDVLYRQAMKLTNNPDDAQDLVQDTFERGFKAFDSFKQGTNFAAWMTTIERNAYFNQYAKAKRRPQRANGSTGEYDDWDIYSASEHSSEQLKSAEQEYLDAYAPEEIMAALNKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGTVMSRLNRARTQLKQELAAYAKERGYAAGTRSGAKTASVGRGRS*